View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18226_low_1 (Length: 757)
Name: NF18226_low_1
Description: NF18226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18226_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 287 - 745
Target Start/End: Complemental strand, 6410428 - 6409970
Alignment:
| Q |
287 |
tagatatatttaagatagacataaacttgagaaacattaaaccagattatgctcctccaaaccggaaaagtatgatgacttaggcacatttcttgccatt |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6410428 |
tagatatatttaagatagacataaacttgagaaacattaaaccagattatgctcctccaaaccggaaaagtatgatgacttaggcacatttcttgccatt |
6410329 |
T |
|
| Q |
387 |
catcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcgacacctttcaccattttcttacaagcactaaggctgcaactctct |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6410328 |
catcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcgacacctttcaccattttcttacaagcactaaggctgcaactctct |
6410229 |
T |
|
| Q |
487 |
cctaacctcttaaatatttgagacaattcctcagcactgattttcccatctccatttatatcaaatacttgaaaagcactcttaatctcctcttctttta |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6410228 |
cctaacctcttaaatatttgagacaattcctcagcactgattttcccatctccatttatatcaaatacttgaaaagcactcttaatctcctcttctttta |
6410129 |
T |
|
| Q |
587 |
tcttattgttttctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagagtccatcacgttaaatgctttcactgcatcagg |
686 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6410128 |
tcttattgttttctccattgaacatttccatgaactctttaaagtctatgaagccatctttgtcagagtccatcacgttaaatgctttcactgcatcagg |
6410029 |
T |
|
| Q |
687 |
atccccaatccccttatccaaagcttttgcagctgctttatactcttccagaataatct |
745 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
6410028 |
atccccaatccccttatccaaagattttgcagctgctttatactcttccagactaatct |
6409970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 357 - 745
Target Start/End: Original strand, 6399398 - 6399789
Alignment:
| Q |
357 |
tatgatgacttaggcacatttcttgccattcatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcgacacctttcaccatt |
456 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||| |
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|
| T |
6399398 |
tatgataacttaggcacatttcttgccattcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcactatcaacccctttcaccatt |
6399497 |
T |
|
| Q |
457 |
ttcttacaagcactaaggctgcaactctctcctaacctcttaaatatttgagacaattcctcagcactgattttcccatctccatttatatcaaatactt |
556 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
6399498 |
ttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaattttcccatcaccatttatatcaaatactt |
6399597 |
T |
|
| Q |
557 |
gaaaagcactcttaatctcctcttcttttatcttattgttttctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagagtc |
656 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6399598 |
gaaaagcactcttaatatcttcttcttttatcttactaccttctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagagtc |
6399697 |
T |
|
| Q |
657 |
catcacgttaaatgctttcactgcatcaggatccc---caatccccttatccaaagcttttgcagctgctttatactcttccagaataatct |
745 |
Q |
| |
|
||| | ||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
6399698 |
cattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgcagctgctttatactcttccagactaatct |
6399789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 357 - 745
Target Start/End: Complemental strand, 6413104 - 6412713
Alignment:
| Q |
357 |
tatgatgacttaggcacatttcttgccattcatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcgacacctttcaccatt |
456 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||| |
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|
| T |
6413104 |
tatgataacttaggcacatttcttgccattcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcactatcaacccctttcaccatt |
6413005 |
T |
|
| Q |
457 |
ttcttacaagcactaaggctgcaactctctcctaacctcttaaatatttgagacaattcctcagcactgattttcccatctccatttatatcaaatactt |
556 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
6413004 |
ttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaattttcccatcaccatttatatcaaatactt |
6412905 |
T |
|
| Q |
557 |
gaaaagcactcttaatctcctcttcttttatcttattgttttctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagagtc |
656 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6412904 |
gaaaagcactcttaatatcttcttcttttatcttactaccttctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagagtc |
6412805 |
T |
|
| Q |
657 |
catcacgttaaatgctttcactgcatcaggatccc---caatccccttatccaaagcttttgcagctgctttatactcttccagaataatct |
745 |
Q |
| |
|
||| | ||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6412804 |
cattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgcagctgctttatactcttccagactaatct |
6412713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 6410696 - 6410485
Alignment:
| Q |
19 |
catctgtcggttagaatgagtttggggttcattcttgagctgagaaggtgtgtgttttctgcggaacttgcgatctcaggaaataagtgaattccagggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6410696 |
catctgtcggttagaatgagtttggggttcattcttgagctgagaaggtgtgtgttttctgcggaacttgcgatctcaggaaataagtcaattccagggt |
6410597 |
T |
|
| Q |
119 |
ttggagacgcatttgagtgtcatcaggaatttgacagaataacattgaatatatttgtatcaaaacaagaaacgagtaactatcaaagaatgaaaatcac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6410596 |
ttggagacgcatttgagtgtcatcaggaatttgacagaataacattgaatatatttgtatcaaaacaagaaacgagtaactatcaaagaatgaaaatcac |
6410497 |
T |
|
| Q |
219 |
caagcatttaac |
230 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6410496 |
caagcatttaac |
6410485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 597 - 736
Target Start/End: Original strand, 6405257 - 6405396
Alignment:
| Q |
597 |
ttctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagagtccatcacgttaaatgctttcactgcatcaggatccccaatc |
696 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| | |||||||||||||||||||||| |||||| | | |
|
|
| T |
6405257 |
ttctccattgaacatttccataaactctctaaagtctatgaatccatctttgtcatagtccatggccttaaatgctttcactgcatcagtatcccctacc |
6405356 |
T |
|
| Q |
697 |
cccttatccaaagcttttgcagctgctttatactcttcca |
736 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6405357 |
cccttatccaaagcttttgcagctgctttatactcttcca |
6405396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 364 - 531
Target Start/End: Original strand, 6402920 - 6403072
Alignment:
| Q |
364 |
acttaggcacatttcttgccattcatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcgacacctttcaccattttcttac |
463 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6402920 |
acttagacacatttcttgccactcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcaccatcgacacctttca------------ |
6403007 |
T |
|
| Q |
464 |
aagcactaaggctgcaactctctcctaacctcttaaatatttgagacaattcctcagcactgattttc |
531 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
6403008 |
---aactaaggctacaactctctcctaacctcttaaatatttgagacaattcatcagcactaattttc |
6403072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 6402502 - 6402622
Alignment:
| Q |
29 |
ttagaatgagtttggggttcattcttgagctgagaaggtgtgtgttttctgcggaacttgcgatctcaggaaataagtgaattccagggtttggagacgc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| || ||||||| ||||||||||| | |||| |||| | |
|
|
| T |
6402502 |
ttagaatgagtttggggttcattcttgagctgcgaaggtgt----tttctgccgaacttgctttcggaggaaattagtgaattccatgatttgcagacac |
6402597 |
T |
|
| Q |
129 |
atttgagtgtcatcaggaatttgac |
153 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
6402598 |
atttgagtgtcatcaggaatttgac |
6402622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 6413348 - 6413268
Alignment:
| Q |
151 |
gacagaataacattgaatatatttgtatcaaaacaagaaacgagtaactatc-aaagaatgaaaatcaccaagcatttaac |
230 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6413348 |
gacaaaataacattgaatatacttgtatcaaaacatgaaaccagtaactatcaaaagaatgaaaatcaccaagcatttaac |
6413268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 6413217 - 6413168
Alignment:
| Q |
287 |
tagatatatttaagatagacataaacttgagaaacattaaaccagattat |
336 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||||| ||||||| ||||| |
|
|
| T |
6413217 |
tagatatattaaagataaacaaaaacttgagaaacactaaaccatattat |
6413168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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