View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18226_low_10 (Length: 326)
Name: NF18226_low_10
Description: NF18226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18226_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 47421692 - 47421987
Alignment:
| Q |
19 |
agttgtgctaatgcatcgggaccattaaattttgttccactggaagtaacagttggcatccttacagggggctgctgtccagaagaacctgtattggttt |
118 |
Q |
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| T |
47421692 |
agttgtgctaatgcatcaggaccattaaattttgttccactggaagtaacagttggcatccttacagggggctgctgtccagaagaacctgtattggttt |
47421791 |
T |
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| Q |
119 |
ttgtctgcaagaaaaaggatggttcttagcataatgtttaaatctatctttaaccaccttaagaaaacacattgtaagataaagtaaactatctattcta |
218 |
Q |
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| T |
47421792 |
ttgt----aagaaaaaggatggttcttagcataacgttgaaatctatctttaaccaccttaagaaaacacattgtaagataaagtaaactatctattcta |
47421887 |
T |
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| Q |
219 |
cctacctgttgttgcacttttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaaatgttctttcggtatttcatctc |
318 |
Q |
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| T |
47421888 |
cctacctgttgttgcacttttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaaatgttctttcggtatttcatctc |
47421987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 47390872 - 47391152
Alignment:
| Q |
18 |
cagttgtgctaatgcatcgggaccattaaattttgttccactggaagtaacagttggcatccttacagggggctgctgtccagaagaacctgtattggtt |
117 |
Q |
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| T |
47390872 |
cagttgtgctaatgcatggggatcgttaaattttgttccactggaagtaacagttggcatccttacagggggctgctgtccagaagaacctgtattggtt |
47390971 |
T |
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| Q |
118 |
tttgtctgcaagaaaaaggatggttcttagcataatgtttaaatctatctttaaccaccttaagaaaacacattgtaagataaagtaaactatctattct |
217 |
Q |
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| T |
47390972 |
tttgtctgcaataaaaaggatggttcttagcataacgttgaaatctatctctaaccaccttaggaa--------------------aaatcatctattct |
47391051 |
T |
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| Q |
218 |
acctacctgttgttgcacttttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaaatgttctttcggtatttcatct |
317 |
Q |
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| T |
47391052 |
gcctacctgttgttgcacttttgttaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttaggtatttcatct |
47391151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 47419232 - 47419515
Alignment:
| Q |
18 |
cagttgtgctaatgcatcgggaccattaaattttgttccactggaagtaacagttggcatccttacagggggctgctgt---ccagaagaacctgtattg |
114 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||| |
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| T |
47419232 |
cagttgtgctaatgcatcgggatcattaaattttgttccactggaagtaacagtagaaatccttacagggggctgctgtccaccagaagaacctgtgttg |
47419331 |
T |
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| Q |
115 |
gtttttgtctgcaagaaaaaggatggttcttagcataatgtttaaatctatctttaaccaccttaagaaaacacattgtaagataaagtaaactatctat |
214 |
Q |
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| T |
47419332 |
gtttttgtctacaagaaaaaggacggttcttagcataacgttgaaacctatctctaaccaccttaagaaaaaac--------------------atctat |
47419411 |
T |
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| Q |
215 |
tctacctacctgttgttgcacttttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaaatgttctttcggtatttca |
314 |
Q |
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| T |
47419412 |
tctacctacctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttgggcatttca |
47419511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 61 - 318
Target Start/End: Original strand, 47408029 - 47408286
Alignment:
| Q |
61 |
gaagtaacagttggcatccttacagggggctgctgtccagaagaacctgtattggtttttgtctgcaagaaaaaggatggttcttagcataatgtttaaa |
160 |
Q |
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||||||||||||||||| |||| |||| |||| |||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||| ||| ||| |
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| T |
47408029 |
gaagtaacagttggcatgcttatagggtgctgttgtccagaagaacccgtattggattttatctgcaagaaaaacaatggttcttagcataacgttgaaa |
47408128 |
T |
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| Q |
161 |
tctatctttaaccaccttaagaaaacacat-tgtaagataaagtaaactatctattctacctacctgttgttgcacttttgctaatgctatcctaagcat |
259 |
Q |
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| T |
47408129 |
tctatattcaatcgccttaa-aaaaaacatctgtaaggctgcataaaccacatactctacctacctgttgctgcacttctgttaatgctttcctaatcat |
47408227 |
T |
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| Q |
260 |
cggatcccccacaatccctttcataagccgtacaaaatgttctttcggtatttcatctc |
318 |
Q |
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| T |
47408228 |
ctgatcctccacaatccctttcaaaagccttacacactgatctttggatatttcatctc |
47408286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 295
Target Start/End: Original strand, 47424605 - 47424696
Alignment:
| Q |
204 |
aaactatctattctacctacctgttgttgcacttttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaa |
295 |
Q |
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| T |
47424605 |
aaaccatctaatctacgtacctgttggtgcacttctgttaatgttgatataagcatctgcttccccacaatgcctttcataagccgtacaaa |
47424696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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