View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18226_low_15 (Length: 239)
Name: NF18226_low_15
Description: NF18226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18226_low_15 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 2795777 - 2795556
Alignment:
| Q |
18 |
atttgcaagtgcagtatctctgatggctcttgctgttttagcagtttctttccttgaatgtacaaagataagaacctgatgctttccggcttcagccata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2795777 |
atttgcaagtgcagtatctctgatggctcttgctgttttagcagtttctttccttgaatgtacaaagataagaacctgatgctttccggcttcagccata |
2795678 |
T |
|
| Q |
118 |
actttctcaaagcagatatcattcatcaactggtacctttgaaaaggcttcttcactgtaattccaataaactgctgagaaagaggaacgggtctataac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2795677 |
actttctcaaagcagatatcattcatcaactggtacctttgaaaaggcttcttcactgtaattccaataaactgctgagaaagaggaacgggtctataac |
2795578 |
T |
|
| Q |
218 |
tattatcaaagtaaaacaaccc |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2795577 |
tattatcaaagtaaaacaaccc |
2795556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 29263283 - 29263075
Alignment:
| Q |
25 |
agtgcagtatctctgatggctcttgctgttttagcagtttctttccttgaatgtacaaagataagaacctgatgctttccggcttcagccataac-tttc |
123 |
Q |
| |
|
||||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| || ||| ||| |||| |
|
|
| T |
29263283 |
agtgcagcatctctgatggctctagcagttttagcagtctctttccttgaatgtacaaagataagaacctgatgcttaccagctacatccagaacctttc |
29263184 |
T |
|
| Q |
124 |
tcaaagcagatatcattcatcaactggtacctttgaaaaggcttcttcactgtaattccaataaactgctgagaaagaggaacgggtctataactattat |
223 |
Q |
| |
|
|| ||||||||||||||||||||| |||| |||| ||||||||| | ||| ||||||||| ||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
29263183 |
ggtaa-cagatatcattcatcaactggaacctctgaagaggcttctttattgtgattccaatatactgctgagaaagaggaacaggtctataactgttat |
29263085 |
T |
|
| Q |
224 |
caaagtaaaa |
233 |
Q |
| |
|
|||| ||||| |
|
|
| T |
29263084 |
caaaataaaa |
29263075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University