View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18226_low_16 (Length: 239)
Name: NF18226_low_16
Description: NF18226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18226_low_16 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2795270 - 2795508
Alignment:
| Q |
1 |
acagaaacagatggaagagactcaaattattgtcacaactcctgagaagtgggatattattacacgaaagtcgggtgatcgaatttatactcagcttgtg |
100 |
Q |
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| T |
2795270 |
acagaaacagatggaagagactcaaattattgtcacaactcctgagaagtgggatattattacacgaaagtcgggtgatcgaatttatactcagcttgtg |
2795369 |
T |
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| Q |
101 |
aagcttcttatcattgatgagattcatcttcttcatgataacagagggcctgttcttgaaagtatcattgctagaacagtcaggcagattgaaacaacga |
200 |
Q |
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| T |
2795370 |
aagcttcttatcattgatgagattcatcttcttcatgataacagagggcctgttcttgaaagtatcattgctagaacagtcaggcagattgaaacaacga |
2795469 |
T |
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| Q |
201 |
aggactatattcggttggtgggattgtctgctacactcc |
239 |
Q |
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| T |
2795470 |
aggactatattcggttggtgggattgtctgctacactcc |
2795508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 29262790 - 29263021
Alignment:
| Q |
8 |
cagatggaagagactcaaattattgtcacaactcctgagaagtgggatattattacacgaaagtcgggtgatcgaatttatactcagcttgtgaagcttc |
107 |
Q |
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| T |
29262790 |
cagatcgaagagactcaaattattgtgacaactcctgagaagtgggatattatcacccgaaagtcgggagatcgaacttatacgcagcttgtgaagcttg |
29262889 |
T |
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| Q |
108 |
ttatcattgatgagattcatcttcttcatgataacagagggcctgttcttgaaagtatcattgctagaacagtcaggcagattgaaacaacgaaggacta |
207 |
Q |
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| T |
29262890 |
tcatcattgatgaaattcatctccttcatgataacagagggcctgttcttgaaagtattgttgctagaacagttaggcagattgaaacatctaaggatta |
29262989 |
T |
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| Q |
208 |
tattcggttggtgggattgtctgctacactcc |
239 |
Q |
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| T |
29262990 |
tattcgtttggtgggattgtcggctactctcc |
29263021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 29189413 - 29189353
Alignment:
| Q |
6 |
aacagatggaagagactcaaattattgtcacaactcctgagaagtgggatattattacacg |
66 |
Q |
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| T |
29189413 |
aacagatagaagagagtcagattatggtgacaactcctgagaaatgagacattattacacg |
29189353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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