View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18226_low_9 (Length: 357)

Name: NF18226_low_9
Description: NF18226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18226_low_9
NF18226_low_9
[»] chr8 (12 HSPs)
chr8 (1-341)||(4634790-4635130)
chr8 (91-277)||(12661025-12661215)
chr8 (123-229)||(11696963-11697072)
chr8 (201-279)||(20662984-20663063)
chr8 (201-279)||(44213101-44213180)
chr8 (201-279)||(30548347-30548426)
chr8 (246-290)||(12249966-12250010)
chr8 (246-290)||(23626110-23626154)
chr8 (246-290)||(39445197-39445241)
chr8 (247-290)||(41907954-41907997)
chr8 (245-290)||(27272628-27272673)
chr8 (248-290)||(21543180-21543222)
[»] chr3 (16 HSPs)
chr3 (73-290)||(30766272-30766493)
chr3 (80-229)||(23937225-23937388)
chr3 (75-278)||(6093210-6093427)
chr3 (126-229)||(188593-188699)
chr3 (123-229)||(37611473-37611582)
chr3 (201-278)||(918794-918872)
chr3 (201-278)||(44072774-44072852)
chr3 (247-290)||(54792746-54792789)
chr3 (246-290)||(12157763-12157807)
chr3 (246-290)||(35437198-35437242)
chr3 (62-131)||(29201498-29201567)
chr3 (126-229)||(22759160-22759264)
chr3 (246-287)||(16496319-16496360)
chr3 (245-290)||(22759111-22759155)
chr3 (245-290)||(44186913-44186958)
chr3 (246-290)||(36164883-36164927)
[»] chr4 (18 HSPs)
chr4 (62-284)||(56541508-56541747)
chr4 (199-290)||(28120239-28120331)
chr4 (123-229)||(33486459-33486568)
chr4 (123-229)||(43014669-43014778)
chr4 (201-279)||(10259390-10259469)
chr4 (123-229)||(16895819-16895928)
chr4 (201-279)||(24077459-24077538)
chr4 (201-279)||(26924329-26924408)
chr4 (201-279)||(43332507-43332586)
chr4 (201-279)||(51452574-51452653)
chr4 (201-279)||(21564986-21565065)
chr4 (245-290)||(23992374-23992419)
chr4 (246-290)||(26870083-26870127)
chr4 (245-284)||(19591022-19591061)
chr4 (245-290)||(49711678-49711723)
chr4 (247-290)||(1975338-1975381)
chr4 (246-278)||(1944909-1944941)
chr4 (246-290)||(3839149-3839193)
[»] chr6 (14 HSPs)
chr6 (125-290)||(2624776-2624945)
chr6 (62-290)||(22975772-22976016)
chr6 (62-290)||(23812385-23812629)
chr6 (201-279)||(250020-250099)
chr6 (201-279)||(12579843-12579922)
chr6 (201-284)||(33979081-33979165)
chr6 (123-229)||(11470851-11470959)
chr6 (123-229)||(18389232-18389340)
chr6 (127-290)||(33300486-33300655)
chr6 (246-290)||(1932283-1932327)
chr6 (246-287)||(4425851-4425892)
chr6 (227-278)||(3052072-3052123)
chr6 (187-229)||(11272683-11272725)
chr6 (62-122)||(2624960-2625020)
[»] chr7 (17 HSPs)
chr7 (101-229)||(42298912-42299043)
chr7 (62-290)||(23476642-23476863)
chr7 (123-229)||(27840368-27840477)
chr7 (201-279)||(20765507-20765586)
chr7 (201-279)||(29491085-29491164)
chr7 (201-279)||(19033712-19033791)
chr7 (201-279)||(20720845-20720924)
chr7 (201-279)||(34282160-34282239)
chr7 (131-229)||(12960469-12960570)
chr7 (246-290)||(9226075-9226119)
chr7 (246-290)||(38434332-38434376)
chr7 (246-290)||(42996884-42996928)
chr7 (216-279)||(33230018-33230082)
chr7 (245-290)||(8998446-8998491)
chr7 (245-290)||(45121972-45122017)
chr7 (246-290)||(42244635-42244679)
chr7 (123-184)||(42687703-42687764)
[»] chr5 (15 HSPs)
chr5 (123-229)||(22602713-22602822)
chr5 (123-229)||(36366203-36366312)
chr5 (201-279)||(37464476-37464555)
chr5 (123-283)||(2366901-2367065)
chr5 (246-290)||(290873-290917)
chr5 (246-290)||(9702652-9702696)
chr5 (227-281)||(18037294-18037348)
chr5 (227-290)||(39169401-39169464)
chr5 (227-283)||(19365869-19365925)
chr5 (126-229)||(38041596-38041702)
chr5 (247-290)||(38041546-38041589)
chr5 (101-131)||(38041709-38041739)
chr5 (246-278)||(9809886-9809918)
chr5 (246-278)||(12702126-12702158)
chr5 (246-278)||(12763142-12763174)
[»] chr2 (17 HSPs)
chr2 (208-290)||(24278957-24279040)
chr2 (201-279)||(11866283-11866362)
chr2 (201-278)||(35357677-35357755)
chr2 (216-279)||(3711069-3711133)
chr2 (123-229)||(7364649-7364757)
chr2 (80-130)||(25283332-25283382)
chr2 (66-131)||(7984205-7984270)
chr2 (158-270)||(32726064-32726180)
chr2 (246-290)||(17092245-17092289)
chr2 (246-290)||(17026060-17026104)
chr2 (245-284)||(1691488-1691527)
chr2 (245-284)||(7984046-7984085)
chr2 (247-290)||(25124098-25124141)
chr2 (101-131)||(1691645-1691675)
chr2 (82-144)||(18092194-18092256)
chr2 (62-107)||(24278891-24278936)
chr2 (110-166)||(1993135-1993191)
[»] chr1 (13 HSPs)
chr1 (123-229)||(3929827-3929936)
chr1 (123-229)||(20767410-20767519)
chr1 (123-229)||(26429201-26429310)
chr1 (121-290)||(34265930-34266105)
chr1 (246-290)||(12714915-12714959)
chr1 (246-290)||(15317589-15317633)
chr1 (246-290)||(28565484-28565528)
chr1 (246-290)||(28631754-28631798)
chr1 (246-287)||(13662177-13662218)
chr1 (245-290)||(23909771-23909816)
chr1 (247-287)||(1954398-1954438)
chr1 (245-279)||(9112133-9112167)
chr1 (101-131)||(23909934-23909964)
[»] scaffold0103 (1 HSPs)
scaffold0103 (62-290)||(12762-13010)
[»] scaffold0440 (1 HSPs)
scaffold0440 (245-290)||(8368-8413)
[»] scaffold0088 (1 HSPs)
scaffold0088 (246-290)||(52747-52791)
[»] scaffold0051 (1 HSPs)
scaffold0051 (246-290)||(61656-61700)
[»] scaffold0499 (1 HSPs)
scaffold0499 (245-290)||(10700-10745)
[»] scaffold0004 (1 HSPs)
scaffold0004 (227-290)||(81010-81073)
[»] scaffold0073 (1 HSPs)
scaffold0073 (245-290)||(33442-33487)
[»] scaffold0006 (2 HSPs)
scaffold0006 (246-287)||(151939-151980)
scaffold0006 (246-278)||(64459-64491)


Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 4635130 - 4634790
Alignment:
Q  1 atgtgatttgatgagacatcttaaggctggtagtaataatgttactatttagatttttaattctatgacggcagcgctcgcttttataattttgactaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4635130 atgtgatttgatgagacatcttaaggctggtagtaataatgttactatttagatttttaattctatgacggcagcgctcgcttttataattttgactaat 4635031  T
Q  101 atgtaatcgtaatttgcacattattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatcttttcatgaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4635030 atgtaatcgtaatttgcacattattggttccaattagtttcatcttaattttaataatgttttcctgaactcatgaacaaaatatatcttttcatgaatc 4634931  T
Q  201 aagacttggtaaagctttcataaatatttgataaagataaatagtgtttgtgcaatattcattaatttgctcatttttcctttggaacaannnnnnnaca 300  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  4634930 aatacttggtaaagctttcataaatatttgataaagataaatagtgtttgtgcaatattcattaatttgctcatttttcctttggaacattttttttaca 4634831  T
Q  301 agataaatagggttagtccataagtgatttcagtcctttat 341  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4634830 agataaatagggttagtccataagtgatttcagtcctttat 4634790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 91 - 277
Target Start/End: Complemental strand, 12661215 - 12661025
Alignment:
Q  91 tttgactaatatgtaatcgtaatttgcacattattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata---t 187  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| |  | |||||||||| |||   |    
T  12661215 tttggctaatatgtaatcgtaatttgcacattattggttccaattagtttcatcttaattattatgatgttttcctagtattatgaacaaaacatatgtt 12661116  T
Q  188 cttttcatgaatcaagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttt 277  Q
     ||||||||||||||||||||| || |||||||||||||||| |||||| ||   || ||||||||||||||||||||||||||| |||||    
T  12661115 gttttcatgaatcaagacttggaaaggctttcataaatatttggataaatatttctaatgtttgtgcaatattcattaatttgcttatttt 12661025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 11696963 - 11697072
Alignment:
Q  123 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 219  Q
    |||||||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||| ||||||   ||||||||||||||||||||||| |||||||    
T  11696963 attggttccaattagtttcaacttaattatgatcatgtttttctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagctttc 11697062  T
Q  220 ataaatattt 229  Q
    ||||||||||    
T  11697063 ataaatattt 11697072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 20663063 - 20662984
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  20663063 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttc 20662984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 44213180 - 44213101
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  44213180 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttc 44213101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 30548426 - 30548347
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||| |||||||||    
T  30548426 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgatcatttttc 30548347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 12250010 - 12249966
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12250010 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 12249966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 23626154 - 23626110
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23626154 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 23626110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 39445197 - 39445241
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  39445197 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 39445241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 41907954 - 41907997
Alignment:
Q  247 tttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||||||||||| |||| ||||||    
T  41907954 tttgtgcaatattcattaatttgctcattttttctttagaacaa 41907997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 27272628 - 27272673
Alignment:
Q  245 tgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||| |||||||||||||||||| ||| ||||||    
T  27272628 tgtttgtgcaatattctttaatttgctcatttttcgtttagaacaa 27272673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 290
Target Start/End: Original strand, 21543180 - 21543222
Alignment:
Q  248 ttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    ||||||||||| |||||||||||||||||||| |||| |||||    
T  21543180 ttgtgcaatatccattaatttgctcatttttcttttgaaacaa 21543222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 73 - 290
Target Start/End: Original strand, 30766272 - 30766493
Alignment:
Q  73 agcgctcgcttttataattttgactaatatgtaatcgtaatttgcacattattggttccaattagtttcatcttaattttaataatgttttcctggactc 172  Q
    |||||||||||| |||||||||||||||||||||||| |||||| |||| ||||||| |||||||||| ||||||||| | ||  ||||| ||||  |||    
T  30766272 agcgctcgctttgataattttgactaatatgtaatcgaaatttgtacatcattggtttcaattagtttaatcttaattattatgttgtttgcctgatctc 30766371  T
Q  173 atgaacaaaatata---tcttttcatgaatcaagacttggtaaagctttcataaata-tttgataaagataaatagtgtttgtgcaatattcattaattt 268  Q
    ||||||||||||||   ||||||||| |||||||||||||||| |||||  |||||| ||||||||| ||   || ||||| || ||||||| |||||||    
T  30766372 atgaacaaaatatatgctcttttcatcaatcaagacttggtaaggctttggtaaatattttgataaatatttctaatgtttatgtaatattccttaattt 30766471  T
Q  269 gctcatttttcctttggaacaa 290  Q
     || ||||||||||||||||||    
T  30766472 acttatttttcctttggaacaa 30766493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 80 - 229
Target Start/End: Original strand, 23937225 - 23937388
Alignment:
Q  80 gcttttataattttgactaatatgtaatcgtaatttgcacattattggttc-----------caattagtttcatcttaattttaataatgttttcctgg 168  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||           || ||||||||||||||||| | || ||||||| ||||    
T  23937225 gcttttataattttgactaatatgtaatcgtaatttgcacgttattgtttctttcattggttcagttagtttcatcttaattattattatgtttttctgg 23937324  T
Q  169 actcatgaacaaaatatat---cttttcatgaatcaagacttggtaaagctttcataaatattt 229  Q
     ||||||||||||||||||   |||||||||||||||||||| ||| |||||||||||||||||    
T  23937325 tctcatgaacaaaatatatctccttttcatgaatcaagacttagtagagctttcataaatattt 23937388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 75 - 278
Target Start/End: Complemental strand, 6093427 - 6093210
Alignment:
Q  75 cgctcgcttttataattttgactaatatgtaatcgtaatttgcacatt-----------attggttccaattagtttcatcttaattttaataatgtttt 163  Q
    ||||| |||||||||||| | |||||||||||||||||||| ||||||           |||||||||||||||||||||||||||| | || ||||||     
T  6093427 cgctcacttttataatttcggctaatatgtaatcgtaattttcacattgttattcattcattggttccaattagtttcatcttaattattatgatgttt- 6093329  T
Q  164 cctggactcatgaacaaaatatatct---tttcatgaatcaagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatatt 259  Q
    ||||| |||||||||||||| ||||    ||||||||||||||||||| || ||||||||||||||||| | |||| ||   || ||||||||||||||     
T  6093328 cctggtctcatgaacaaaatgtatccatatttcatgaatcaagacttgatagagctttcataaatattttggtaaaaatttctaatgtttgtgcaatatc 6093229  T
Q  260 cattaatttgctcattttt 278  Q
    |||||||||||| ||||||    
T  6093228 cattaatttgcttattttt 6093210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 126 - 229
Target Start/End: Original strand, 188593 - 188699
Alignment:
Q  126 ggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttcata 222  Q
    ||||||||||||||||| ||||||| | || ||||||||||||  ||||||||||| ||||||   ||||||||||||||||||||||| | ||||||||    
T  188593 ggttccaattagtttcaacttaattatgatcatgttttcctggtttcatgaacaaagtatatcatcttttcatgaatcaagacttggtagaactttcata 188692  T
Q  223 aatattt 229  Q
    |||||||    
T  188693 aatattt 188699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 37611582 - 37611473
Alignment:
Q  123 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 219  Q
    ||||||| |||||||||||| ||||||| | || |||||||||||   ||||||||| | ||||||   ||||||||||||||||||||||| |||||||    
T  37611582 attggtttcaattagtttcaacttaattatgatcatgttttcctgatttcatgaacatagtatatcctcttttcatgaatcaagacttggtagagctttc 37611483  T
Q  220 ataaatattt 229  Q
    ||||||||||    
T  37611482 ataaatattt 37611473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 918794 - 918872
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcattttt 278  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||| |||||    
T  918794 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctctttttt 918872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 44072852 - 44072774
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcattttt 278  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||||| ||||||    
T  44072852 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctaattttt 44072774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 290
Target Start/End: Complemental strand, 54792789 - 54792746
Alignment:
Q  247 tttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  54792789 tttgtgcaatattcattaatttgctcatttttcctttggaacaa 54792746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 12157807 - 12157763
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  12157807 gtttgagcaatattcattaatttgctcatttttcctttggaacaa 12157763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 35437198 - 35437242
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  35437198 gtttgtgcaatattcattaatttgctcattttttctttggaacaa 35437242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 29201498 - 29201567
Alignment:
Q  62 tctatgacggcagcgctcgcttttataattttgactaatatgtaatcgtaatttgcacattattggttcc 131  Q
    |||||||||| | | ||| |||||||||||||| |||| ||||||| ||||||||||||||||| |||||    
T  29201498 tctatgacggtaaccctcacttttataattttggctaacatgtaattgtaatttgcacattattagttcc 29201567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 229
Target Start/End: Complemental strand, 22759264 - 22759160
Alignment:
Q  126 ggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc-ttttcatgaatcaagacttggtaaagctttcataaa 224  Q
    ||||||||||||||| ||||||||| | ||  |||||||     ||| ||||||||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  22759264 ggttccaattagtttaatcttaattattatgttgttttctcaatctcttgaacaaaatatatccttttcatgaatcaagacccggtaaagttttgataaa 22759165  T
Q  225 tattt 229  Q
    |||||    
T  22759164 tattt 22759160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 16496319 - 16496360
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaa 287  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  16496319 gtttgtacaatattcattaatttgatcatttttcctttggaa 16496360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 22759155 - 22759111
Alignment:
Q  245 tgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||| |||||||||| |||||||||||| |||||    
T  22759155 tgtttgtgcaatattccttaatttgct-atttttcctttgaaacaa 22759111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 44186958 - 44186913
Alignment:
Q  245 tgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||| |||||||||||  ||||||| ||||||||||    
T  44186958 tgtttgtgcaatatccattaatttgcctatttttcgtttggaacaa 44186913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 36164927 - 36164883
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||| |||||||| ||||||||| |||| ||||||    
T  36164927 gtttgtgcaatattaattaatttactcattttttctttagaacaa 36164883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 62 - 284
Target Start/End: Original strand, 56541508 - 56541747
Alignment:
Q  62 tctatgacggcagcgctcgcttttataattttgactaatatgtaatcgtaatttgcacatt------------attggttccaattagtttcatcttaat 149  Q
    |||||||| | ||| || ||||||||||||| | ||||||| |||||||||||||||||||            |||||||||||||||||||||||||||    
T  56541508 tctatgacagtagcacttgcttttataatttgggctaatatataatcgtaatttgcacattcttggttccttcattggttccaattagtttcatcttaat 56541607  T
Q  150 tttaataatgttttcctggactcatgaacaaaatata-----tcttttcatgaatcaagacttggtaaagctttcataaatatttgataaagataaatag 244  Q
    | | || |||||||||||| |||||||||||||||||     | |||||||||| |||||| ||||||  |||||||||||| |||||||| ||   ||     
T  56541608 tattatgatgttttcctggtctcatgaacaaaatatatgtttttttttcatgaaacaagacctggtaagactttcataaataattgataaatatttctaa 56541707  T
Q  245 tgtttgtgcaatattcattaatttgctcatttttcctttg 284  Q
    |||||||||||  ||  |||||||||| ||||||||||||    
T  56541708 tgtttgtgcaacttttcttaatttgcttatttttcctttg 56541747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 199 - 290
Target Start/End: Complemental strand, 28120331 - 28120239
Alignment:
Q  199 tcaagacttggtaaagctttcataaatatt-tgataaagataaatagtgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    ||||||||||||||| |||||||||||||| ||||||||||  ||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  28120331 tcaagacttggtaaaactttcataaatattctgataaagatttataatgtttgtgcaatattcattaatttactcatttttcctttggaacaa 28120239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 33486568 - 33486459
Alignment:
Q  123 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 219  Q
    |||||||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||| ||||||   ||||||||||||||||||||||| |||||||    
T  33486568 attggttccaattagtttcaacttaattatgatcatgtttttctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagctttc 33486469  T
Q  220 ataaatattt 229  Q
    ||||||||||    
T  33486468 ataaatattt 33486459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 43014778 - 43014669
Alignment:
Q  123 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 219  Q
    |||||||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||| ||||||   ||||||||||||||||||||||| |||||||    
T  43014778 attggttccaattagtttcaacttaattatgatcatgtttttctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagctttc 43014679  T
Q  220 ataaatattt 229  Q
    ||||||||||    
T  43014678 ataaatattt 43014669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 10259469 - 10259390
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  10259469 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttc 10259390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 16895819 - 16895928
Alignment:
Q  123 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 219  Q
    ||||||||||||||||| || ||||||| | || ||||||||||||  ||||||||||  ||||||   ||||||||||||||||||||||| |||||||    
T  16895819 attggttccaattagttgcaacttaattattatcatgttttcctggtttcatgaacaaggtatatcctcttttcatgaatcaagacttggtagagctttc 16895918  T
Q  220 ataaatattt 229  Q
    ||||||||||    
T  16895919 ataaatattt 16895928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 24077538 - 24077459
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  24077538 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttc 24077459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 26924408 - 26924329
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  26924408 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttc 26924329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 43332507 - 43332586
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  43332507 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttc 43332586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 51452574 - 51452653
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  51452574 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttc 51452653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 21564986 - 21565065
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| |||| ||||||||||||||| |||||||||  ||| ||||| |||||||||||||||||||||||||||||    
T  21564986 aagacttgataaaactttcataaatattttgataaagatttataatgtttatgcaatattcattaatttgctcatttttc 21565065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 23992419 - 23992374
Alignment:
Q  245 tgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  23992419 tgtttgtgcaatattcagtaatttgctcatttttcctttggaacaa 23992374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 26870127 - 26870083
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  26870127 gtttgtgcaatattcattaatttgctcatttttccttttgaacaa 26870083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 284
Target Start/End: Original strand, 19591022 - 19591061
Alignment:
Q  245 tgtttgtgcaatattcattaatttgctcatttttcctttg 284  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19591022 tgtttgtgcaatattcattaatttgctcatttttcctttg 19591061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 49711723 - 49711678
Alignment:
Q  245 tgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||    
T  49711723 tgtttgtgcactattccttaatttgctcatttttcctttggaacaa 49711678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 1975338 - 1975381
Alignment:
Q  247 tttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  1975338 tttgtgcaatattccttaatttgctcatttttcctttgaaacaa 1975381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 1944909 - 1944941
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcattttt 278  Q
    ||||||||||||||||||||||||||| |||||    
T  1944909 gtttgtgcaatattcattaatttgctctttttt 1944941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 3839193 - 3839149
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||| ||||||||| |||||||| ||| |||||||    
T  3839193 gtttgtgcaatatttattaatttgttcattttttcttaggaacaa 3839149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 125 - 290
Target Start/End: Complemental strand, 2624945 - 2624776
Alignment:
Q  125 tggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatctttt----catgaatcaagacttggtaaagctttca 220  Q
    ||||||||||||||||| ||||||| ||| | |||||||| ||| |||||||||||||||||| ||||    ||| |||||||||||||||| |||||||    
T  2624945 tggttccaattagtttcttcttaatctta-tgatgttttcgtggtctcatgaacaaaatatatgttttttttcataaatcaagacttggtaaggctttca 2624847  T
Q  221 taaata-tttgataaagataaatagtgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||| ||||||||| ||   || |||||||||||| ||  ||||||| ||||||||||||||| |||||    
T  2624846 taaatattttgataaatatttttaatgtttgtgcaatttttcttaattttctcatttttcctttgaaacaa 2624776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 62 - 290
Target Start/End: Complemental strand, 22976016 - 22975772
Alignment:
Q  62 tctatgacggcagcgctcgcttttataattttgactaatatgtaatcgtaatttgcacattattggttcc------------aattagtttcatcttaat 149  Q
    |||||||| | ||| || ||||||||||||| | ||||||||||||||||||||||||||| || |||||            ||||||||||||||||||    
T  22976016 tctatgaccgtagcacttgcttttataatttgggctaatatgtaatcgtaatttgcacattttttgttccttcagtggctccaattagtttcatcttaat 22975917  T
Q  150 tttaataatgttttcctggactcatgaacaaaatata-----tcttttcatgaatcaagacttggtaaagctttcataaata-tttgataaagataaata 243  Q
     ||| | |||||||| ||| |||||||||||||||||     | ||||||| ||||||||| ||||||  |||||||||||| ||||||||| ||   ||    
T  22975916 ctta-tgatgttttcgtggtctcatgaacaaaatatatgtttttttttcataaatcaagac-tggtaagactttcataaatattttgataaatattttta 22975819  T
Q  244 gtgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
     |||||||||||| ||  |||||||||||||||||||||||||||||    
T  22975818 atgtttgtgcaatttttcttaatttgctcatttttcctttggaacaa 22975772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 62 - 290
Target Start/End: Original strand, 23812385 - 23812629
Alignment:
Q  62 tctatgacggcagcgctcgcttttataattttgactaatatgtaatcgtaatttgcacattattggttcc------------aattagtttcatcttaat 149  Q
    |||||||| | ||| || ||||||||||||| | ||||||||||||||||||||||||||| || |||||            ||||||||||||||||||    
T  23812385 tctatgaccgtagcacttgcttttataatttgggctaatatgtaatcgtaatttgcacattttttgttccttcagtggctccaattagtttcatcttaat 23812484  T
Q  150 tttaataatgttttcctggactcatgaacaaaatata-----tcttttcatgaatcaagacttggtaaagctttcataaata-tttgataaagataaata 243  Q
     ||| | |||||||| ||| |||||||||||||||||     | ||||||| ||||||||| ||||||  |||||||||||| ||||||||| ||   ||    
T  23812485 ctta-tgatgttttcgtggtctcatgaacaaaatatatgtttttttttcataaatcaagac-tggtaagactttcataaatattttgataaatattttta 23812582  T
Q  244 gtgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
     |||||||||||| ||  |||||||||||||||||||||||||||||    
T  23812583 atgtttgtgcaatttttcttaatttgctcatttttcctttggaacaa 23812629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 250020 - 250099
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  250020 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttc 250099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 12579922 - 12579843
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  12579922 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttc 12579843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 33979081 - 33979165
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttcctttg 284  Q
    |||||||| |||| ||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||||||||||||| ||||    
T  33979081 aagacttgataaaactttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttcttttg 33979165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 11470959 - 11470851
Alignment:
Q  123 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatctt---ttcatgaatcaagacttggtaaagctttc 219  Q
    |||||||||||||||||||| |||| || | || ||||||||||||  ||||||||||| |||||| |   ||||||||||||||||||||| |||||||    
T  11470959 attggttccaattagtttcaactta-ttatgatcatgttttcctggtttcatgaacaaagtatatcctctgttcatgaatcaagacttggtagagctttc 11470861  T
Q  220 ataaatattt 229  Q
    ||||||||||    
T  11470860 ataaatattt 11470851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 18389340 - 18389232
Alignment:
Q  123 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 219  Q
    ||||||||||||||||||||  ||| || | || ||||||||||||  ||||||||||| ||||||   ||||||||||||||||||||||| ||||||     
T  18389340 attggttccaattagtttcaattta-ttatgatcatgttttcctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagctttg 18389242  T
Q  220 ataaatattt 229  Q
     |||||||||    
T  18389241 gtaaatattt 18389232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 290
Target Start/End: Original strand, 33300486 - 33300655
Alignment:
Q  127 gttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatat---cttttcatgaatcaagacttggtaaagctttcataa 223  Q
    |||||||||||||| ||||||||| | ||  ||| ||| ||  ||||||||||||||||||   ||||||||||||||||||  ||||| ||||| ||||    
T  33300486 gttccaattagtttaatcttaattattatgttgtgttcttgatctcatgaacaaaatatatgctcttttcatgaatcaagaccaggtaaggctttgataa 33300585  T
Q  224 ---atatttgataaagataaatagtgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
       | |  ||||||| ||   || |||||||| ||||||| ||||||| ||||||||||||||| |||||    
T  33300586 gacacaaatgataaatatttctaatgtttgtgaaatattccttaatttactcatttttcctttgaaacaa 33300655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 1932283 - 1932327
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  1932283 gtttgtgcaatattcattaatttgctcattttttctttggaacaa 1932327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 4425851 - 4425892
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaa 287  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  4425851 gtttgtgcaatattcattaatttgctcattttttctttggaa 4425892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 3052123 - 3052072
Alignment:
Q  227 tttgataaagataaatagtgtttgtgcaatattcattaatttgctcattttt 278  Q
    ||||||||||||  ||| | ||||||||||||||||||||||||||||||||    
T  3052123 tttgataaagatttataatatttgtgcaatattcattaatttgctcattttt 3052072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 11272683 - 11272725
Alignment:
Q  187 tcttttcatgaatcaagacttggtaaagctttcataaatattt 229  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  11272683 tcttttcatgaatcaagatttggtagagctttcataaatattt 11272725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 2625020 - 2624960
Alignment:
Q  62 tctatgacggcagcgctcgcttttataattttgactaatatgtaatcgtaatttgcacatt 122  Q
    |||||||| | ||| || ||||||||||||| | |||||||||||| ||||||| ||||||    
T  2625020 tctatgacagtagcacttgcttttataatttgggctaatatgtaattgtaattttcacatt 2624960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 42299043 - 42298912
Alignment:
Q  101 atgtaatcgtaatttgcacattattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata---tcttttcatga 197  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||  ||||||||||  |||||| ||||||||||   |||||||| ||    
T  42299043 atgtaatcgtaatttgcacatcattggttccaattagtttaatcttaattattatgttgttttcctgatctcatggacaaaatatatgctcttttcaaga 42298944  T
Q  198 atcaagacttggtaaagctttcataaatattt 229  Q
    |||||||| |||||| | ||| ||||||||||    
T  42298943 atcaagacctggtaatgttttgataaatattt 42298912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 62 - 290
Target Start/End: Complemental strand, 23476863 - 23476642
Alignment:
Q  62 tctatgacggcagcgctcgcttttataattttgactaatatgtaatcgtaatttgcacattattggttccaattagtttcatcttaatt-ttaataatgt 160  Q
    |||||||| | ||||||||||||||||||  |  |||||||||||||||||||| ||| | |||||||||||||||||| ||||||||| |||    | |    
T  23476863 tctatgacagtagcgctcgcttttataatgatagctaatatgtaatcgtaatttacacttcattggttccaattagtttaatcttaattattatgttttt 23476764  T
Q  161 tttcctggactcatgaacaaaatata---tcttttcatgaatcaagacttggtaaagctttcataaatatttgataaagataaatagtgtttgtgcaata 257  Q
    |||  ||  |||||||||||||||||   | ||||||||||||||||||||||||  |||| ||||||||||            || |||||||||||||    
T  23476763 ttttttgttctcatgaacaaaatatatgttattttcatgaatcaagacttggtaagactttgataaatattt-----------ctaatgtttgtgcaata 23476675  T
Q  258 ttcattaatttgctcatttttcctttggaacaa 290  Q
    ||  |||||||||||||||||||||| ||||||    
T  23476674 tttcttaatttgctcatttttcctttagaacaa 23476642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 27840368 - 27840477
Alignment:
Q  123 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 219  Q
    |||||||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||| ||||||   ||||||||||||||||||||||| |||||||    
T  27840368 attggttccaattagtttcaacttaattatgatcatgtttttctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagctttc 27840467  T
Q  220 ataaatattt 229  Q
    ||||||||||    
T  27840468 ataaatattt 27840477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 20765507 - 20765586
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  20765507 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttc 20765586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 29491085 - 29491164
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  29491085 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttc 29491164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 19033791 - 19033712
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| |||||||||||||||||||| |||||| ||  ||| |||||||||||||||||||||||||||||||||||    
T  19033791 aagacttgataaagctttcataaatattttgataaaaatttataatgtttgtgcaatattcattaatttgctcatttttc 19033712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 20720845 - 20720924
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| |||||||||||||||||||| |||||| ||  ||| |||||||||||||||||||||||||||||||||||    
T  20720845 aagacttgataaagctttcataaatattttgataaaaatttataatgtttgtgcaatattcattaatttgctcatttttc 20720924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 34282239 - 34282160
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| |||| ||||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  34282239 aagacttgataaaactttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttc 34282160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 12960469 - 12960570
Alignment:
Q  131 caattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttcataaatat 227  Q
    |||||||||||| ||||||| | || |||||||||||   ||||||||| | ||||||   ||||||||||||||||||||||| |||||||||||||||    
T  12960469 caattagtttcaacttaattatgatcatgttttcctgatttcatgaacatagtatatcctcttttcatgaatcaagacttggtagagctttcataaatat 12960568  T
Q  228 tt 229  Q
    ||    
T  12960569 tt 12960570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 9226119 - 9226075
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9226119 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 9226075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 38434376 - 38434332
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38434376 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 38434332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 42996884 - 42996928
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42996884 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 42996928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 279
Target Start/End: Complemental strand, 33230082 - 33230018
Alignment:
Q  216 tttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||||||||| |||||||||  ||| ||||||||||||||||||||||||||| |||||||    
T  33230082 tttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgcttatttttc 33230018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 8998446 - 8998491
Alignment:
Q  245 tgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    ||||| |||| ||||| |||||||||||||||||||||||||||||    
T  8998446 tgtttttgcactattccttaatttgctcatttttcctttggaacaa 8998491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 45121972 - 45122017
Alignment:
Q  245 tgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||    
T  45121972 tgtttgtgcactattccttaatttgctcattttttctttggaacaa 45122017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 42244679 - 42244635
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||| |||||||| ||| |||||||    
T  42244679 gtttgtgcaatattcattaatttgttcattttttcttaggaacaa 42244635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 42687703 - 42687764
Alignment:
Q  123 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 184  Q
    ||||||||||||||||||||| |||||| ||||  |||||||||   ||| |||||||||||    
T  42687703 attggttccaattagtttcatgttaattgtaatgttgttttcctaatctcttgaacaaaata 42687764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 22602822 - 22602713
Alignment:
Q  123 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 219  Q
    |||||||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||| ||||||   ||||||||||||||||||||||| |||||||    
T  22602822 attggttccaattagtttcaacttaattatgatcatgtttttctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagctttc 22602723  T
Q  220 ataaatattt 229  Q
    ||||||||||    
T  22602722 ataaatattt 22602713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 36366312 - 36366203
Alignment:
Q  123 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 219  Q
    ||||||| |||||||||||| ||||||| | || |||||||||||   ||| ||||||| ||||||   |||||||||||||||||||||||||||||||    
T  36366312 attggtttcaattagtttcaacttaattatgatcatgttttcctgatttcaggaacaaagtatatcctattttcatgaatcaagacttggtaaagctttc 36366213  T
Q  220 ataaatattt 229  Q
    ||||||||||    
T  36366212 ataaatattt 36366203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 37464476 - 37464555
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| ||||| |||||||||||||| |||||||||  ||| | |||||||||||||||||||||||||||||||||    
T  37464476 aagacttgataaagttttcataaatattttgataaagatttataatttttgtgcaatattcattaatttgctcatttttc 37464555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 123 - 283
Target Start/End: Complemental strand, 2367065 - 2366901
Alignment:
Q  123 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatat---cttttcatgaatcaagacttggtaaagctttc 219  Q
    |||||||||||||||||| |||||||   | ||  |||||||||    |||||||||||||||||   |||||||||||||||||| || ||| |||||     
T  2367065 attggttccaattagtttaatcttaacaattatgttgttttccttatttcatgaacaaaatatatgctcttttcatgaatcaagacctgataaggctttg 2366966  T
Q  220 ataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttccttt 283  Q
     ||||||||| ||||||  |   || | |||||||||||||| ||||||||||||||||||||||    
T  2366965 ttaaatattttgataaatctttctaatatttgtgcaatattccttaatttgctcatttttccttt 2366901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 290873 - 290917
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  290873 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 9702652 - 9702696
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9702652 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 9702696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 18037348 - 18037294
Alignment:
Q  227 tttgataaagataaatagtgtttgtgcaatattcattaatttgctcatttttcct 281  Q
    ||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  18037348 tttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttcct 18037294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 39169464 - 39169401
Alignment:
Q  227 tttgataaagataaatagtgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    ||||||||| ||  ||| ||||||||||||||||| |||||| ||||||||||||| |||||||    
T  39169464 tttgataaatatttataatgtttgtgcaatattcagtaattttctcatttttccttcggaacaa 39169401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 19365869 - 19365925
Alignment:
Q  227 tttgataaagataaatagtgtttgtgcaatattcattaatttgctcatttttccttt 283  Q
    ||||||||| ||  ||| |||||||||||||||| ||||||||||||||||| ||||    
T  19365869 tttgataaatatttataatgtttgtgcaatattccttaatttgctcattttttcttt 19365925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 229
Target Start/End: Complemental strand, 38041702 - 38041596
Alignment:
Q  126 ggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatat---cttttcatgaatcaagacttggtaaagctttcata 222  Q
    ||||||||||||||| ||||||||| | ||  |||||||     ||| ||||||||||||||   ||||| ||||||||||||  ||||||||||| |||    
T  38041702 ggttccaattagtttaatcttaattattatgttgttttctcaatctcgtgaacaaaatatatgctctttttatgaatcaagacccggtaaagctttgata 38041603  T
Q  223 aatattt 229  Q
    |||||||    
T  38041602 aatattt 38041596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 290
Target Start/End: Complemental strand, 38041589 - 38041546
Alignment:
Q  247 tttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||| ||||||||||||||||| ||||| |||||    
T  38041589 tttgtgcaatattccttaatttgctcattttttctttgaaacaa 38041546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 131
Target Start/End: Complemental strand, 38041739 - 38041709
Alignment:
Q  101 atgtaatcgtaatttgcacattattggttcc 131  Q
    |||||||||||||||||||||||||||||||    
T  38041739 atgtaatcgtaatttgcacattattggttcc 38041709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 9809918 - 9809886
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcattttt 278  Q
    ||||||||||||||||||||||||| |||||||    
T  9809918 gtttgtgcaatattcattaatttgcacattttt 9809886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 12702158 - 12702126
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcattttt 278  Q
    ||||||||||||||||||||||||| |||||||    
T  12702158 gtttgtgcaatattcattaatttgcacattttt 12702126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 12763174 - 12763142
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcattttt 278  Q
    ||||||||||||||||||||||||| |||||||    
T  12763174 gtttgtgcaatattcattaatttgcacattttt 12763142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 24278957 - 24279040
Alignment:
Q  208 ggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  24278957 ggtaaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttccttcggaacaa 24279040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 11866362 - 11866283
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||| ||||| |||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  11866362 aagacttgataaagttttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttc 11866283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 35357755 - 35357677
Alignment:
Q  201 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcattttt 278  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||| ||||||||||||||||||||||||||    
T  35357755 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtacaatattcattaatttgctcattttt 35357677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 3711069 - 3711133
Alignment:
Q  216 tttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaatttgctcatttttc 279  Q
    |||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  3711069 tttcataaatattttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttc 3711133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 7364649 - 7364757
Alignment:
Q  123 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 219  Q
    ||||||||||||||||||||  ||| || | || ||||||||||||  ||||||||||| ||||||   ||||||||||||||||||||||| ||||||     
T  7364649 attggttccaattagtttcaattta-ttatgatcatgttttcctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagctttg 7364747  T
Q  220 ataaatattt 229  Q
     |||||||||    
T  7364748 gtaaatattt 7364757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 25283382 - 25283332
Alignment:
Q  80 gcttttataattttgactaatatgtaatcgtaatttgcacattattggttc 130  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  25283382 gcttttataattttggctaatatgtaatcgtaatttgtacattattggttc 25283332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 7984270 - 7984205
Alignment:
Q  66 tgacggcagcgctcgcttttataattttgactaatatgtaatcgtaatttgcacattattggttcc 131  Q
    |||||| |||||||| ||||||||||||  ||||||||||||| |||||||||||| |||||||||    
T  7984270 tgacggtagcgctcgattttataattttagctaatatgtaatcttaatttgcacatcattggttcc 7984205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 270
Target Start/End: Complemental strand, 32726180 - 32726064
Alignment:
Q  158 tgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgc 253  Q
    ||||||||||| ||||||| |||||| ||||   |||||||||||||||||||| || ||||||| ||||||||| | |||| ||   || ||||| |||    
T  32726180 tgttttcctggtctcatgagcaaaatgtatccctttttcatgaatcaagacttgatagagctttcgtaaatattttggtaaaaatttctaatgtttatgc 32726081  T
Q  254 aatattcattaatttgc 270  Q
    ||||| |||||||||||    
T  32726080 aatatccattaatttgc 32726064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 17092245 - 17092289
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||| |||||||||| |||||||||||||    
T  17092245 gtttgtgcaatattcattaaattgctcatttctcctttggaacaa 17092289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 17026060 - 17026104
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||||| |||| ||||||| |||||    
T  17026060 gtttgtgcaatattcattaatttgctnatttctcctttgnaacaa 17026104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 284
Target Start/End: Complemental strand, 1691527 - 1691488
Alignment:
Q  245 tgtttgtgcaatattcattaatttgctcatttttcctttg 284  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  1691527 tgtttgtgcaatattccttaatttgctcattttttctttg 1691488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 284
Target Start/End: Complemental strand, 7984085 - 7984046
Alignment:
Q  245 tgtttgtgcaatattcattaatttgctcatttttcctttg 284  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  7984085 tgtttgtgcaatgttccttaatttgctcatttttcctttg 7984046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 290
Target Start/End: Complemental strand, 25124141 - 25124098
Alignment:
Q  247 tttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||| ||||||| ||||||||||||||| |||||    
T  25124141 tttgtgcaatattccttaatttactcatttttcctttgaaacaa 25124098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 131
Target Start/End: Complemental strand, 1691675 - 1691645
Alignment:
Q  101 atgtaatcgtaatttgcacattattggttcc 131  Q
    |||||||||||||||||||||||||||||||    
T  1691675 atgtaatcgtaatttgcacattattggttcc 1691645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 18092256 - 18092194
Alignment:
Q  82 ttttataattttgactaatatgtaatcgtaatttgcacattattggttccaattagtttcatc 144  Q
    |||||||||||||  |||||||||||| |||||  ||||| |||||||||||||  |||||||    
T  18092256 ttttataattttggataatatgtaatcataattcacacatcattggttccaattgttttcatc 18092194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 24278891 - 24278936
Alignment:
Q  62 tctatgacggcagcgctcgcttttataattttgactaatatgtaat 107  Q
    |||||||| | ||||||| ||||||||||||| |||||||||||||    
T  24278891 tctatgacagtagcgctcacttttataattttaactaatatgtaat 24278936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 1993191 - 1993135
Alignment:
Q  110 taatttgcacattattggttccaattagtttcatcttaattttaataatgttttcct 166  Q
    |||| |||||||||||||||| ||||||| |||| |||||| ||||  |||||||||    
T  1993191 taatctgcacattattggttcaaattagtatcatgttaattataatgttgttttcct 1993135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 3929936 - 3929827
Alignment:
Q  123 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 219  Q
    |||||||||||||||||||| ||||||| | ||  |||||||||||  ||||||||||| ||||||   ||||||||||||||||||||||| |||||||    
T  3929936 attggttccaattagtttcaacttaattatgatcgtgttttcctggtttcatgaacaaagtatatcatcttttcatgaatcaagacttggtagagctttc 3929837  T
Q  220 ataaatattt 229  Q
    ||||||||||    
T  3929836 ataaatattt 3929827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 20767410 - 20767519
Alignment:
Q  123 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 219  Q
    |||||||||||||||||||| | ||||| | || ||||||||||||  ||||||||||| ||||||   ||||||||||||||||||||||| |||||||    
T  20767410 attggttccaattagtttcaacctaattatgatcatgttttcctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagctttc 20767509  T
Q  220 ataaatattt 229  Q
    ||||||||||    
T  20767510 ataaatattt 20767519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 26429310 - 26429201
Alignment:
Q  123 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 219  Q
    |||||||||||||||||||| ||||||| | || ||||||| |||   ||||||||| | ||||||   ||||||||||||||||||||||| |||||||    
T  26429310 attggttccaattagtttcaacttaattatgatcatgtttttctgttttcatgaacatagtatatcctcttttcatgaatcaagacttggtagagctttc 26429211  T
Q  220 ataaatattt 229  Q
    ||||||||||    
T  26429210 ataaatattt 26429201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 290
Target Start/End: Complemental strand, 34266105 - 34265930
Alignment:
Q  121 ttattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata---tcttttcatgaatcaagacttggtaaagctt 217  Q
    |||||||||||||||||||| ||||||||| | ||  ||| ||| ||  |||||||||||||||||   |||||||||||||||| || |||||| ||||    
T  34266105 ttattggttccaattagtttaatcttaattattatgttgtgttcttgatctcatgaacaaaatatatgctcttttcatgaatcaatacctggtaaggctt 34266006  T
Q  218 tcataa---atatttgataaagataaatagtgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    | ||||   | |  ||||||| ||   || |||||||| ||||||| ||||||||||||||||| ||||| |||||    
T  34266005 tgataagacacaaatgataaatatttctaatgtttgtgaaatattccttaatttgctcattttttctttgaaacaa 34265930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 12714915 - 12714959
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12714915 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 12714959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 15317589 - 15317633
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  15317589 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 15317633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 28565528 - 28565484
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28565528 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 28565484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 28631754 - 28631798
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28631754 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 28631798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 13662218 - 13662177
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaa 287  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  13662218 gtttgtacaatattcattaatttgatcatttttcctttggaa 13662177  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 23909816 - 23909771
Alignment:
Q  245 tgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||| ||||||||||||||||| ||||| |||||    
T  23909816 tgtttgtgcaatattccttaatttgctcattttttctttgaaacaa 23909771  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 1954438 - 1954398
Alignment:
Q  247 tttgtgcaatattcattaatttgctcatttttcctttggaa 287  Q
    |||||| ||||||||||||||||||||||||| ||||||||    
T  1954438 tttgtgtaatattcattaatttgctcattttttctttggaa 1954398  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 9112133 - 9112167
Alignment:
Q  245 tgtttgtgcaatattcattaatttgctcatttttc 279  Q
    ||||||||||||||| |||||||||||||||||||    
T  9112133 tgtttgtgcaatatttattaatttgctcatttttc 9112167  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 131
Target Start/End: Complemental strand, 23909964 - 23909934
Alignment:
Q  101 atgtaatcgtaatttgcacattattggttcc 131  Q
    |||||||||||||||||||||||||||||||    
T  23909964 atgtaatcgtaatttgcacattattggttcc 23909934  T

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Target: scaffold0103 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 290
Target Start/End: Original strand, 12762 - 13010
Alignment:
Q  62 tctatgacggcagcgctcgcttttataattttgactaatatgtaatcgtaatttgcacattatt------------ggttccaattagtttcatcttaat 149  Q
    |||||||| | ||| || ||||||||||||| | ||||||||||||||||||||||||||| ||            ||||||||||| ||||||||||||    
T  12762 tctatgacagtagcacttgcttttataatttgggctaatatgtaatcgtaatttgcacattttttgttccttcggtggttccaattaatttcatcttaat 12861  T
Q  150 tttaataatgttttcctggactcatgaacaaaatatatctttt---------catgaatcaagacttggtaaagctttcataaatattt-gataaagata 239  Q
     ||| | |||||||| ||| |||||||||||||||||| ||||         ||| ||| |||||||||||| |||||||||||||||| |||||| ||     
T  12862 ctta-tgatgttttcgtggtctcatgaacaaaatatatgttttttttttcttcataaat-aagacttggtaaggctttcataaatattttgataaatatt 12959  T
Q  240 aatagtgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
      || |||||||||||| ||  ||||||| |||||||||||||||||||||    
T  12960 tttaatgtttgtgcaatttttcttaatttcctcatttttcctttggaacaa 13010  T

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Target: scaffold0440 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 8413 - 8368
Alignment:
Q  245 tgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8413 tgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 8368  T

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Target: scaffold0088 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 52791 - 52747
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  52791 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 52747  T

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Target: scaffold0051 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 61656 - 61700
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  61656 gtttgtgcaatattcattaatttgctcatttttcctttggaacaa 61700  T

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Target: scaffold0499 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 10745 - 10700
Alignment:
Q  245 tgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||    
T  10745 tgtttgtgcactattccttaatttgctcatttttcctttggaacaa 10700  T

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Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 81010 - 81073
Alignment:
Q  227 tttgataaagataaatagtgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    ||||||||| ||  ||| |||| ||||||||||| ||||||||||||||||||||||| |||||    
T  81010 tttgataaatatttataatgttcgtgcaatattccttaatttgctcatttttcctttgaaacaa 81073  T

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Target: scaffold0073 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 33487 - 33442
Alignment:
Q  245 tgtttgtgcaatattcattaatttgctcatttttcctttggaacaa 290  Q
    ||||||||||  |||| |||||||||||||||||||||||||||||    
T  33487 tgtttgtgcacgattccttaatttgctcatttttcctttggaacaa 33442  T

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Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 151980 - 151939
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcatttttcctttggaa 287  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  151980 gtttgtacaatattcattaatttgatcatttttcctttggaa 151939  T

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Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 64491 - 64459
Alignment:
Q  246 gtttgtgcaatattcattaatttgctcattttt 278  Q
    ||||||||||||||||||||||||||| |||||    
T  64491 gtttgtgcaatattcattaatttgctctttttt 64459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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