View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_high_16 (Length: 382)
Name: NF18227_high_16
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 365
Target Start/End: Original strand, 28733613 - 28733965
Alignment:
| Q |
13 |
tgaaggcaagattattggagagagagacaaaactacaaaatataactgaagagaacaatacacttaagatggaaataaagagagaggagttagagaagaa |
112 |
Q |
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| T |
28733613 |
tgaaggcaagattattggagagagagacaaaactacaaaatataactgaagagaacaatacacttaagatggaaataaagagagaggagttagagaagaa |
28733712 |
T |
|
| Q |
113 |
taaaatcatggatgaggctgttgcttccgctgaggcagcaagggccgcggagcgagaggctttgacaaaactcagctacataacagaagaagctgatgaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733713 |
taaaatcatggatgaggctgttgcttccgctgaggcagcaagggccgcggagcgagaggctttgacaaaactcagctacataacagaagaagctgatgaa |
28733812 |
T |
|
| Q |
213 |
agtaaccgaatgataacacgtgtaactgaggagttagatactgcacaggcgtcaaatttggaattagaggctgaattaaggagattgaaagtacagtcag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28733813 |
agtaaccgaatgataacacgtgtaactgaggagttagatactgcacaggcgtcaaatttggagttagaggctgaattaaggagattgaaagtacagtcag |
28733912 |
T |
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| Q |
313 |
atcaatggaggaaagcagctgaagcagctgctgctatgatttcttcaggaaac |
365 |
Q |
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| T |
28733913 |
atcaatggaggaaagcagctgaagcagctgctgctataatttcttcaggaaac |
28733965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 340
Target Start/End: Original strand, 22110677 - 22110870
Alignment:
| Q |
147 |
gcagcaagggccgcggagcgagaggctttgacaaaactcagctacataacagaagaagctgatgaaagtaaccgaatgataacacgtgtaactgaggagt |
246 |
Q |
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| T |
22110677 |
gcagcaagggctgcagagaaagaggctttgacgaaacttagctatgtaatggaagaagcggataaaagtaacagaagagtggctcgtgtaactgaacagc |
22110776 |
T |
|
| Q |
247 |
tagatactgcacaggcgtcaaatttggaattagaggctgaattaaggagattgaaagtacagtcagatcaatggaggaaagcagctgaagcagc |
340 |
Q |
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||||| |||| ||||| | |||| || | || || |||||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| |
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| T |
22110777 |
tagatgctgctcaggctgcgaattcagagctggaagccgaattaaggagattgaaagttcagtctgatcagtggagaaaagcagctgaggcagc |
22110870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 340
Target Start/End: Complemental strand, 40583912 - 40583719
Alignment:
| Q |
147 |
gcagcaagggccgcggagcgagaggctttgacaaaactcagctacataacagaagaagctgatgaaagtaaccgaatgataacacgtgtaactgaggagt |
246 |
Q |
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||||||||||| || ||| |||||||||||| ||||| ||||| ||| |||||||| ||| |||||||| ||| | | ||||||||||| || |
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| T |
40583912 |
gcagcaagggctgcagagaaagaggctttgacgaaacttagctatgtaatggaagaagcggataaaagtaacagaagagtggctcgtgtaactgaacagc |
40583813 |
T |
|
| Q |
247 |
tagatactgcacaggcgtcaaatttggaattagaggctgaattaaggagattgaaagtacagtcagatcaatggaggaaagcagctgaagcagc |
340 |
Q |
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| T |
40583812 |
tagatgctgctcaggctgcgaattcagagctggaagccgaattaaggagattgaaagttcagtctgatcagtggagaaaagcagctgaggcagc |
40583719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 22473060 - 22473112
Alignment:
| Q |
303 |
gtacagtcagatcaatggaggaaagcagctgaagcagctgctgctatgatttc |
355 |
Q |
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|||||||| |||||||||||||| || || || |||||||||||||||||||| |
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| T |
22473060 |
gtacagtctgatcaatggaggaaggctgcagaggcagctgctgctatgatttc |
22473112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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