View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_high_18 (Length: 379)
Name: NF18227_high_18
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_high_18 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 379
Target Start/End: Complemental strand, 34965133 - 34964771
Alignment:
| Q |
17 |
aattaacgttgtacttcatttagatatgatagaattggccttgatatgatgaagacccaacagaaacataaagagctctggcttatgtgattggatggtg |
116 |
Q |
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| T |
34965133 |
aattaacgttgtacttcatttagatatgatagaattggccttgatatgatgaagacccaacagaaacataaagagctctggcttatgtgattggatggtg |
34965034 |
T |
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| Q |
117 |
atcgttgcatttttgaatttcgatagaaaagaagaagaaaagcattactatagtacattctctatggctgtgccatatattgctttttcatttggcaatg |
216 |
Q |
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| T |
34965033 |
atcgttgcatttttgaatttcgatagaaaagaagaagaaaagcattactatagtacattctctatggctgtgccatatattgctttttcatttggcaatg |
34964934 |
T |
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| Q |
217 |
gaagaggtcaggagtggatcaagtcagtgggttacccagtgccacaatttctggctttaaccatattcatatattgatttaatcaatgcttgattgcttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34964933 |
gaagaggtcaggagtggatcaagtcagtgggttacccagtgccacaatttctggctttaaccatattcatatattgatttaatcaatgcttgattgcttt |
34964834 |
T |
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| Q |
317 |
gcttgcgtccctaacactaatacgtcacattcatagtactcatacaagttacattcaatgcca |
379 |
Q |
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| T |
34964833 |
gcttgcgtccctaacactaatacgtcacattcatagtactcacacaagttacattcaatgcca |
34964771 |
T |
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