View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_high_27 (Length: 299)
Name: NF18227_high_27
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 47192140 - 47192405
Alignment:
| Q |
18 |
agctttgattttccaacagatactcttcttcctggccaagaaattaatgagcgagcaaccttagtttcatccaaaagtgaaacaaactattcctcaggtt |
117 |
Q |
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| T |
47192140 |
agctttgattttccaacagatactcttcttcctggccaagaaattaatgagcgagcaaccttagtttcatccaaaagtgaaacaaactattcctcaggtt |
47192239 |
T |
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| Q |
118 |
tctataagttttatttcgacaacgacaatgctcttcgtcttctattcaaaagtcctttgttatctagtgtctattggccatcaccttgggtattacctgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47192240 |
tctataagttttatttcgacaacgacaatgctcttcgtcttctattcaaaagtcctttgttatctagtgtctattggccatcaccttgggtattacctgt |
47192339 |
T |
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| Q |
218 |
tgatgcaggaagatcaacttataatgttactaaaatcgcgctactcgattcctttggccatttcat |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47192340 |
tgatgcaggaagatcaacttataatgttactaaaatcgcgctactcgattcctttggccatttcat |
47192405 |
T |
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