View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18227_high_28 (Length: 294)
Name: NF18227_high_28
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_high_28 |
 | |
|
| [»] scaffold2079 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold2079 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 1104 - 845
Alignment:
| Q |
16 |
acccaaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatggaaggaaa |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1104 |
acccaaataaatccaagcaattgtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatgggaggaaa |
1005 |
T |
|
| Q |
116 |
ctattgatgtgaagctgcaccaaagctaggtagtaaagaaaaatcgcaaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1004 |
ctattgatgtgaagctgcaccaaagctaggtagtaaagaaaaatggcaaaaaccaaagcc---atcagtagagattttcggttgcttgtattcattgctg |
908 |
T |
|
| Q |
216 |
caaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattca |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
907 |
caaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattca |
845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 6242886 - 6242619
Alignment:
| Q |
16 |
acccaaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatggaaggaaa |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6242886 |
acccaaataaatccaagcaattgtcggcgaaat----------gctaaaattgaaataacacttccaagtaaaagaattaccatcatgtatggaaggaaa |
6242797 |
T |
|
| Q |
116 |
ctattgatgtgaagctg---------------caccaaagctaggtagtaaagaaaaatcgcaaaaaccaaagccatcatcagtagagattttccgttgc |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6242796 |
ctattgatgtgaagctgtaacattgtcacaagcaccaaagctaggtagtaaagaaaaatagcgaaaaccaaagccatcatcagtagagattttccgttgc |
6242697 |
T |
|
| Q |
201 |
ttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattca |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6242696 |
ttgtattcattgctgcaaacccgacgattgcaaacaatagcttgaaaaattggccaaataattctccaacttcattca |
6242619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 6325784 - 6325896
Alignment:
| Q |
16 |
acccaaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatggaaggaaa |
115 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| | |||| || | |||| ||| |
|
|
| T |
6325784 |
acccaaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaatgaat |
6325883 |
T |
|
| Q |
116 |
ctattgatgtgaa |
128 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
6325884 |
ctcttgatgtgaa |
6325896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 6346379 - 6346494
Alignment:
| Q |
17 |
cccaaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatggaaggaaac |
116 |
Q |
| |
|
|||||| ||||||||||||| || || ||||| | |||||| |||| || ||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
6346379 |
cccaaaaaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagt |
6346478 |
T |
|
| Q |
117 |
tattgatgtgaagctg |
132 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
6346479 |
tcttgatgtgaagctg |
6346494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 6219729 - 6219620
Alignment:
| Q |
19 |
caaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatggaaggaaacta |
118 |
Q |
| |
|
|||| ||||||||||||| || || ||||| | |||||| |||| || ||||||||||||||||||||||| ||| |||||||||||||||||||| || |
|
|
| T |
6219729 |
caaaaaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctc |
6219630 |
T |
|
| Q |
119 |
ttgatgtgaa |
128 |
Q |
| |
|
|||||||||| |
|
|
| T |
6219629 |
ttgatgtgaa |
6219620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 6333261 - 6333373
Alignment:
| Q |
16 |
acccaaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatggaaggaaa |
115 |
Q |
| |
|
||||||||||||||||||||| || || ||||| | |||||| ||||||| ||||||||||||||||||||||||||| | |||| || | |||| |||| |
|
|
| T |
6333261 |
acccaaataaatccaagcaattgtaggagaaattatcatcaaagctaaaactgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaagaaa |
6333360 |
T |
|
| Q |
116 |
ctattgatgtgaa |
128 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
6333361 |
ctcttgatgtgaa |
6333373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 278
Target Start/End: Original strand, 6325984 - 6326076
Alignment:
| Q |
186 |
gagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattca |
278 |
Q |
| |
|
|||| ||||| || ||||| |||||| |||||||||| ||||||||||||| ||| |||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
6325984 |
gagactttcccttacttgtgttcattttcgcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttca |
6326076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 278
Target Start/End: Original strand, 6333461 - 6333553
Alignment:
| Q |
186 |
gagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattca |
278 |
Q |
| |
|
|||| ||||| || ||||| |||||| |||||||||| ||||||||||||| ||| |||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
6333461 |
gagactttcccttacttgtgttcattttcgcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttca |
6333553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 6346541 - 6346655
Alignment:
| Q |
164 |
aaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataatt |
263 |
Q |
| |
|
|||||||||||||||| ||| | |||||| || | ||||||||| ||| ||||||||| | ||||| |||||| ||| |||||||||| |||| || |
|
|
| T |
6346541 |
aaaaccaaagccatcagaagtggtgatttttcgatacttgtattcgttgttgcaaacccaattattgcgaacaatagctcaaaaaattggcttaatagtt |
6346640 |
T |
|
| Q |
264 |
ctccaacttcattca |
278 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6346641 |
ttccaacttcattca |
6346655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University