View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_high_29 (Length: 285)
Name: NF18227_high_29
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 43464282 - 43464533
Alignment:
| Q |
19 |
cagaggtgtctcaatatacatatccaaatatgttaatcatcgtaaggattgacttcctgctgcaaaagatgatctatgccatgccaataattgtactcaa |
118 |
Q |
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| T |
43464282 |
cagaggtgtctcaatatacctatccaaatatgttaatcatcgtaaggattgacttcctgctgcaaaagatgatctatgc-----caataattgtactcaa |
43464376 |
T |
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| Q |
119 |
ctactagccatttctgttgcaaatgcatgcaacttgactctagataccttaattgcactttattcaatataattacaatttaatcatttttcctttaatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43464377 |
ctactagccatttctgttgcaaatgcatgcaacttgactctagataccttaattgcactttattcaatataattacaatttaatcatttttcctttaatt |
43464476 |
T |
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| Q |
219 |
actcatgtgcttatttaagatcacaccctcatcatcatggatagctcttcttgctct |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43464477 |
actcatgtgcttatttaagatcacaccctcatcatcatggatagctcttcttgctct |
43464533 |
T |
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