View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18227_high_30 (Length: 284)

Name: NF18227_high_30
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18227_high_30
NF18227_high_30
[»] chr1 (1 HSPs)
chr1 (1-284)||(43159723-43160006)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 43160006 - 43159723
Alignment:
Q  1 ttgctaaattaataaatatatgttgatttctgttgaatttggttcattttcagcaatgatgttaaggaatttatgttggtttgtcttaatatattgttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43160006 ttgctaaattaataaatatatgttgatttctgttgaatttggttcattttcagcaatgatgttaaggaatttatgttggtttgtcttaatatattgttaa 43159907  T
Q  101 gtcattctgcatggtacacatgatgttgaaatgctacatttagtggtacttatttctttattataatcattttttgcttaaaacacactttttctagaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43159906 gtcattctgcatggtacacatgatgttgaaatgctacatttagtggtacttatttctttattataatcattttttgcttaaaacacactttttctagaac 43159807  T
Q  201 tcttttgtcatgttttctattttcttaatcctatttaggtattgatgtagaagatatagcatgtagtgtatgacatttggggta 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43159806 tcttttgtcatgttttctattttcttaatcctatttaggtattgatgaagaagatatagcatgtagtgtatgacatttggggta 43159723  T

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