View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18227_high_31 (Length: 280)
Name: NF18227_high_31
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_high_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 45666312 - 45666576
Alignment:
| Q |
1 |
tcatcaacttggtttatggtcaacaacatcacttcttcaatgaaaccgaagaactctttctgttagaggctcatgaacatgcaacatcctttcttgagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45666312 |
tcatcaacttggtttatggtcaacaacatcacttcttcaatgaaactgaagaactctttctgttagaggctcatgaacatgcagcatcctttcttgagga |
45666411 |
T |
|
| Q |
101 |
gggtaatggaaatcctcttctcgtaggattcacccttatccacaatgcagctgctaaaggagcaggtactatactagtactagtactacctacaaacaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45666412 |
gggtaatggaaatcctcttctcgtaggactcacccttgttcacaatgcagctgctaaaggagcaggtactatactagtactagtactacctacaaacaat |
45666511 |
T |
|
| Q |
201 |
acagcacctttctcctcctttcctctctaacattaaata-ttttttgtttcttgcagtgtgcttgg |
265 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45666512 |
acagcacctttctcctcctttcctctc-aacattaaatatttttttgtttcttgcagtgtgcttgg |
45666576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University