View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18227_high_40 (Length: 239)

Name: NF18227_high_40
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18227_high_40
NF18227_high_40
[»] chr5 (1 HSPs)
chr5 (18-225)||(33563696-33563903)
[»] chr2 (9 HSPs)
chr2 (18-225)||(39225032-39225239)
chr2 (35-225)||(39385895-39386085)
chr2 (85-225)||(39180025-39180165)
chr2 (62-225)||(39203991-39204154)
chr2 (35-225)||(39163463-39163653)
chr2 (35-225)||(39372515-39372707)
chr2 (112-225)||(39395886-39395999)
chr2 (26-130)||(39379114-39379217)
chr2 (87-167)||(39217829-39217909)
[»] chr6 (1 HSPs)
chr6 (146-224)||(16115567-16115645)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 33563903 - 33563696
Alignment:
Q  18 ccaacaatagtagtgtgtaagttagcacgttttgattaccccatttctttacattaggttgttccactccaaaaactaattgcctttatgtgcttttagc 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33563903 ccaacaatagtagtgtgtaagttagcacgtttcgattaccccatttctttacattaggttgttccactccaaaaactaattgcctttatgtgattttagc 33563804  T
Q  118 acaagaatgcgatggtcaatctccttatgaagcagatccgcagattctagtctgttctctgaaatgcattgtaaaacagtcccgagactagcaatttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33563803 acaagaatgcgatggtcaatctccttatgaagcagatccgcagattctagtctgttctctgaaatgcattgtaaaacagtcccgagactagcaatttctt 33563704  T
Q  218 gatctctg 225  Q
    ||||||||    
T  33563703 gatctctg 33563696  T

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Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 39225239 - 39225032
Alignment:
Q  18 ccaacaatagtagtgtgtaagttagcacgttttgattaccccatttctttacattaggttgttccactccaaaaactaattgcctttatgtgcttttagc 117  Q
    ||||||| |||||||| |||||||||| ||||  |||||||||||| |||||||||| ||||| ||  |||||||||||  ||||||||||||||| |||    
T  39225239 ccaacaacagtagtgtataagttagcaggtttccattaccccatttgtttacattagcttgtttcagcccaaaaactaacagcctttatgtgctttgagc 39225140  T
Q  118 acaagaatgcgatggtcaatctccttatgaagcagatccgcagattctagtctgttctctgaaatgcattgtaaaacagtcccgagactagcaatttctt 217  Q
     |||||||||||| ||| |||||||||||||||||| ||||||||||||| ||| |  | ||||||||||| | ||||||||| ||||||||||||||||    
T  39225139 tcaagaatgcgatagtcgatctccttatgaagcagacccgcagattctaggctgctgaccgaaatgcattgcagaacagtccccagactagcaatttctt 39225040  T
Q  218 gatctctg 225  Q
    ||||||||    
T  39225039 gatctctg 39225032  T

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Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 35 - 225
Target Start/End: Original strand, 39385895 - 39386085
Alignment:
Q  35 taagttagcacgttttgattaccccatttctttacattaggttgttccactccaaaaactaattgcctttatgtgcttttagcacaagaatgcgatggtc 134  Q
    |||||||||||||||  |||||||||||||||| ||||| ||||||  | | ||||||||| ||||||||||||||||||||| ||||||||||||  ||    
T  39385895 taagttagcacgtttccattaccccatttctttgcattaagttgttttagtacaaaaactatttgcctttatgtgcttttagctcaagaatgcgatattc 39385994  T
Q  135 aatctccttatgaagcagatccgcagattctagtctgttctctgaaatgcattgtaaaacagtcccgagactagcaatttcttgatctctg 225  Q
    |||||| | | ||||||||||| ||  ||||||| |||  || ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  39385995 aatctcataaagaagcagatcctcaacttctagtttgtaatccgaaatgcattgtagaacagtccccagactagcaatttcttgatctctg 39386085  T

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Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 85 - 225
Target Start/End: Complemental strand, 39180165 - 39180025
Alignment:
Q  85 tccaaaaactaattgcctttatgtgcttttagcacaagaatgcgatggtcaatctccttatgaagcagatccgcagattctagtctgttctctgaaatgc 184  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||  || ||| |||||| ||  |||| ||||||||||    
T  39180165 tccaaaaactaattgcctttatgtgcttttagctcaagaatgcgatagtcaatctccttatgaagttgacccgtagattcaaggttgttgtctgaaatgc 39180066  T
Q  185 attgtaaaacagtcccgagactagcaatttcttgatctctg 225  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  39180065 attgtagaacagtcccaagactagcaatttcttgatctctg 39180025  T

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Target: chr2; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 39203991 - 39204154
Alignment:
Q  62 ttctttacattaggttgttccactccaaaaactaattgcctttatgtgcttttagcacaagaatgcgatggtcaatctccttatgaagcagatccgcaga 161  Q
    |||||| |||||| |||||||| ||||| ||||||| ||||||||||||||||||| ||||||||||||  ||||||||||||||||||||| ||| |||    
T  39203991 ttctttccattagcttgttccagtccaataactaatagcctttatgtgcttttagctcaagaatgcgatattcaatctccttatgaagcagacccgtaga 39204090  T
Q  162 ttctagtctgttctctgaaatgcattgtaaaacagtcccgagactagcaatttcttgatctctg 225  Q
    ||| ||  || | || ||||||||||| | ||||||||| |||||||||||||||| |||||||    
T  39204091 ttcaaggttgctatcagaaatgcattgcagaacagtcccaagactagcaatttcttcatctctg 39204154  T

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Target: chr2; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 39163653 - 39163463
Alignment:
Q  35 taagttagcacgttttgattaccccatttctttacattaggttgttccactccaaaaactaattgcctttatgtgcttttagcacaagaatgcgatggtc 134  Q
    ||||||||||| |||  ||||   ||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||  ||    
T  39163653 taagttagcacatttccattatggcatttgtttacattagcttgttccagtccaaaaactaatagcctttatgtgcttttagctcaagaatgcgatattc 39163554  T
Q  135 aatctccttatgaagcagatccgcagattctagtctgttctctgaaatgcattgtaaaacagtcccgagactagcaatttcttgatctctg 225  Q
    ||| |||  |||||||||| ||| |||||| ||  || | || ||||||||||| | ||||||||| |||||||||||||||| |||||||    
T  39163553 aatatccgcatgaagcagacccgtagattcaaggttgctgtcagaaatgcattgcagaacagtcccaagactagcaatttcttcatctctg 39163463  T

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Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 39372707 - 39372515
Alignment:
Q  35 taagttagcacgttttgattaccccatttctttacat--taggttgttccactccaaaaactaattgcctttatgtgcttttagcacaagaatgcgatgg 132  Q
    |||||||||| ||||  |||||||||||||| |||||  |||  ||||||| | ||||||||||| ||||||||||||||| ||| ||||||||||||      
T  39372707 taagttagcaggtttgcattaccccatttctatacatattagtctgttccagtacaaaaactaatggcctttatgtgctttaagctcaagaatgcgatat 39372608  T
Q  133 tcaatctccttatgaagcagatccgcagattctagtctgttctctgaaatgcattgtaaaacagtcccgagactagcaatttcttgatctctg 225  Q
    | ||||||||||| ||||||||| |||||||  ||  |||  ||  ||||||| || | |||||| |  ||||||||||||||||||||||||    
T  39372607 tgaatctccttatcaagcagatctgcagattgcaggttgtgatccaaaatgcactgcagaacagttctcagactagcaatttcttgatctctg 39372515  T

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Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 39395886 - 39395999
Alignment:
Q  112 tttagcacaagaatgcgatggtcaatctccttatgaagcagatccgcagattctagtctgttctctgaaatgcattgtaaaacagtcccgagactagcaa 211  Q
    |||||| ||||||| ||||  | |||||||||  ||||||||||| | |||||||| |||||||||||||||||||||| |||||| || |||| |||||    
T  39395886 tttagctcaagaatacgatattgaatctccttgcgaagcagatcctctgattctagactgttctctgaaatgcattgtagaacagttcccagacaagcaa 39395985  T
Q  212 tttcttgatctctg 225  Q
    ||||||||||||||    
T  39395986 tttcttgatctctg 39395999  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 39379114 - 39379217
Alignment:
Q  26 agtagtgtgtaagttagcacgttttgattaccccatttctttacattaggttgttccactccaaaaactaattgcctttatgtgcttttagcacaagaat 125  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||| ||||||||| ||| |||| |||| || |||||||||||||  ||| |||| ||    
T  39379114 agtagtgtataagttagc-cgtttccattaccccatttctttacatcaggttgttctactacaaacactactttcctttatgtgcttgcagctcaagcat 39379212  T
Q  126 gcgat 130  Q
    |||||    
T  39379213 gcgat 39379217  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 39217909 - 39217829
Alignment:
Q  87 caaaaactaattgcctttatgtgcttttagcacaagaatgcgatggtcaatctccttatgaagcagatccgcagattctag 167  Q
    ||||| |||||||||||||||| |||||||| |||||||||||| |||||| |||||   ||||||| || ||||||||||    
T  39217909 caaaacctaattgcctttatgtccttttagctcaagaatgcgatagtcaatttcctttataagcagaacctcagattctag 39217829  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 16115645 - 16115567
Alignment:
Q  146 gaagcagatccgcagattctagtctgttctctgaaatgcattgtaaaacagtcccgagactagcaatttcttgatctct 224  Q
    ||||||||||| |||||||||| ||||| ||||| |||||||||| |||||| || |||||||| ||||||||||||||    
T  16115645 gaagcagatcctcagattctaggctgttgtctgatatgcattgtagaacagttcccagactagcgatttcttgatctct 16115567  T

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