View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_high_41 (Length: 228)
Name: NF18227_high_41
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 37605411 - 37605204
Alignment:
| Q |
19 |
ccattatcaatagcgataaggtttctcttcttttaagtgcat---------gttgtgacttgcaccaagttgtattatgtgtgctaagcactcattttac |
109 |
Q |
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| T |
37605411 |
ccattatcaatagcgataaggtttctcttcttttaagtgcatatagtgcatgttgtgacttgcaccaagttgtattatgtgtgctaagcactcattttac |
37605312 |
T |
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| Q |
110 |
gagggtatagtaaaatgaaagatcattggtttttccaatagtatgcttatcaatttatttaagtggtttttagaccaattaaaagg-ttatgagctattt |
208 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
37605311 |
gagggtatagtaaaatgaaagattattggtttttccaatagtgttcttatcaatttatttaagtg--ttttagaccaattaaaaggtttatgagctattt |
37605214 |
T |
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| Q |
209 |
ctgtgctgct |
218 |
Q |
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|||| |||| |
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| T |
37605213 |
ttgtgttgct |
37605204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 37599216 - 37599017
Alignment:
| Q |
19 |
ccattatcaatagcgataaggtttctcttcttttaagtgcat---------gttgtgacttgcaccaagttgtattatgtgtgctaagcactcattttac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37599216 |
ccattatcaatagcgataaggtttctcttcttttaagtgcatatagtgcatgttgtgacttgcaccaagttgtattatgtgtgctaagcactcattttac |
37599117 |
T |
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| Q |
110 |
gagggtatagtaaaatgaaagatcattggtttttccaatagtatgcttatcaatttatttaagtggtttttagaccaattaaaagg-ttatgagctattt |
208 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||| | |||||| ||||||||||||| ||||| ||| || ||||||| ||||||||||||| |
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| T |
37599116 |
gagggtatagtaaaatgaaagattattagtttttccaatagtgttcttatccatttatttaagtgctttttggacaaaataaaaggtttatgagctattt |
37599017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 10327530 - 10327476
Alignment:
| Q |
162 |
atttatttaagtggtttttagaccaattaaaagg-ttatgagctatttctgtgct |
215 |
Q |
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|||||||||| ||||| ||||||||||||| ||| ||||||||||||| |||||| |
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| T |
10327530 |
atttatttaattggttcttagaccaattaagaggtttatgagctatttttgtgct |
10327476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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