View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18227_low_1 (Length: 999)
Name: NF18227_low_1
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 824; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 824; E-Value: 0
Query Start/End: Original strand, 1 - 993
Target Start/End: Complemental strand, 24831000 - 24830004
Alignment:
| Q |
1 |
atgagagcaaataatgattcatttgtgtgacgacttagtccttgttatttctgagggtagaagcaaatattatgcagtaaatagtgtcaagaatgttgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24831000 |
atgagagcaaataatgattcatttgtgtgacgacttagtccttgttatttctgagggcagaagcaaatattatgcagtaaatagtgtcaagaatgttgat |
24830901 |
T |
|
| Q |
101 |
gatggttgattggaaagacaaaaatgtttaattaaggtttccgattgcaccgcgattttgaggcttctggttaattttatgttgtaagcatctgtgtaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
24830900 |
aatggttgattggaaagacaaaaatgtttaattaaggttcccgattgcaccgcgattttgaggcttctggttagttttatgttgta-------gtgtaag |
24830808 |
T |
|
| Q |
201 |
gtgattaaggtttttaagagggttaattgtttttcatgatgatggtatgctataaaggttgttactttgtcacaaatgaattaacactcctcttaccgtg |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
24830807 |
gtgattaaggtttttaagagggttatttgtttttcatgatgatggtatgctataaaggttgttactttgtgacaaaggaattaacactcttcttaccgtg |
24830708 |
T |
|
| Q |
301 |
cctacaaatgtgtctaggttggatcctatacaactgttttgacatcaagtgcaaatttggcgttggtattctctttatgatgttggtagacgatccgtgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24830707 |
cctacaaatgtgtctaggttggatcctatacaacttttttgacatcaagtgcaaatttggcgttggtattctctttatgatgttggtagacgatccgtgt |
24830608 |
T |
|
| Q |
401 |
tttgtggaaatgaaagaacattttgcttcacaagagtgtgccatcatatctttcactactacctaaaagattatgttggtgaatcattccttgcagttgt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24830607 |
tttgtggaaatgaaagaacattttgcttcacaagagtgtgccatcatatctttcactactacctaaaagattatgttggtgaatcattccttgcagttgt |
24830508 |
T |
|
| Q |
501 |
aggcactctgagaggagtgttagacacatgtgcaatgttgtttccaaggagttcctggaaatttgcgggatagaaattctacctggtttcaaatggagat |
600 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
24830507 |
aggcactgtgagaggagtgttagacacatgtgcaatgttgtttccaaggagttcctggaaatttgcaggatggaaattctacctggtttcaaatggagat |
24830408 |
T |
|
| Q |
601 |
ctagaaaagaggtggttgattggctgacgtcgatgctatcaaagcagcatctccgggaagatagaagtggtaagttgatatttcgtatttctgatctgat |
700 |
Q |
| |
|
|||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24830407 |
ctagaagagaggtggttgattggccgacatcgatgctatcaaagcagcatctccgggaagatagaagtggtaagttgatatttcgtatttctgatctgat |
24830308 |
T |
|
| Q |
701 |
cagttgttgccatatataactgctttgttcattgcagtgttgtctatcgtggaaaacaacagtttgttcaaattttgctacacaagagtactatagcgcc |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24830307 |
cagttgttgccatatataactgctttgttcattgcagtgttgtctatcacggaaaacaacagtttgttcaaattttgctacacaagagtgctatagcgcc |
24830208 |
T |
|
| Q |
801 |
gatatagcctttagttgacaacattttatagtactaaatagtgtattgtagaacaatagcgatttgttcaactttcgcaatgttgtagcactaaagcgcc |
900 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
24830207 |
gatatagcctttatttgacaacatttta---tactaaatagtgtattgtagaacaatagcgattttttcaactttcgcaatgttgtagcactaaagtgcc |
24830111 |
T |
|
| Q |
901 |
actataaatgtgacttaaccttggtatccgagattgttggttcaggtgtacaatt--------------gtagctcggaaacaactgaaagtgcaatatg |
986 |
Q |
| |
|
| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24830110 |
agtataaatgtgacttaaccttggcatctgagattgttggttcaggtgtacaattgtacaggactacaggtagctcggaaacaactgaaagtgcaatatg |
24830011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 312 - 871
Target Start/End: Original strand, 23246234 - 23246790
Alignment:
| Q |
312 |
gtctaggttggatcctatacaactgttttgacatcaagtgcaaatttggcgttggtattctctttatgatgttggtagacgatccgtgttttgtggaaat |
411 |
Q |
| |
|
|||||| ||||| ||||||| ||| |||||| |||||||| | | | | |||||||||||||||| ||||| | ||||||||||||||||||||||| |
|
|
| T |
23246234 |
gtctagattggaccctatactact-ttttgaaatcaagtgtatgtctagtgttggtattctctttaagatgtcgatagacgatccgtgttttgtggaatg |
23246332 |
T |
|
| Q |
412 |
gaaagaacattttgcttcacaagagtgtg-ccatcatatctttcactactacctaaaagattatgttggtgaatcattccttgcagttgtaggcactctg |
510 |
Q |
| |
|
|||||| ||||||| |||||||||| ||| ||||| ||| ||||||| |||||||| || | || ||| || || || ||||||||||| |||||| | |
|
|
| T |
23246333 |
gaaagagcattttgtttcacaagagcgtggccatcgtatagttcactattacctaaaggactctgctggggagtcctttcttgcagttgtcggcact--g |
23246430 |
T |
|
| Q |
511 |
agaggagtgttagacacatgtgcaatgttgtttccaaggagttcctggaaatttgcgggatagaaattctacctggtttcaaatggagatctagaaaaga |
610 |
Q |
| |
|
||||||||||||||||||||||| ||||| || | |||||||| |||||||||| || || ||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
23246431 |
agaggagtgttagacacatgtgctatgttattgcagaggagttcttggaaatttgtggaatggaaattccacctggtttcaaatggagatctagaagaga |
23246530 |
T |
|
| Q |
611 |
ggtggttgattggctgacgtcgatgctatcaaagcagcatctccgggaagatagaagtggtaagttgatatttcgtattt---ctgatctgatcagttgt |
707 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||| ||| |||| ||||| |||||| ||||||||| |
|
|
| T |
23246531 |
ggtggttgattggctgacctcgatgttatcaaagcagcatctggaggaagatagaagtggtaagtcgatgtttcttatttctactgatcgaatcagttgt |
23246630 |
T |
|
| Q |
708 |
tgccatatataactgctttgttcattgcagtgttgtctatcgtggaaaacaacagtttgttcaaattttgctacacaagagtactatagcgccgatatag |
807 |
Q |
| |
|
||||||||||| | ||| |||||| ||||||||| | |||| |||| |||||||| |||||||| |||||| || ||| ||||| | || | ||| |
|
|
| T |
23246631 |
cgccatatataattatgttgatcattgtagtgttgtcaagcgtgaaaaagaacagtttattcaaattctgctacgcatcagtgttatagtg-cgctgtag |
23246729 |
T |
|
| Q |
808 |
cctttagttgacaacattttatagtactaaatagtgtattgtagaacaatagcgatttgttcaa |
871 |
Q |
| |
|
||| || ||| || ||||||| ||||||||||||||||| ||||||| | ||||||||||| |
|
|
| T |
23246730 |
cctctatttgccatcatttta---cactaaatagtgtattgtggaacaatggtgatttgttcaa |
23246790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 23246153 - 23246227
Alignment:
| Q |
206 |
taaggtttttaagagggttaattgttttt-catgatgatggtatgctataaaggttgttactttgtcacaaatgaa |
280 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||| |||||| || |||||||||||||||| ||||||||| |
|
|
| T |
23246153 |
taaggttttttagagggttaattgtttttccatgatgttggtatact-gcaaggttgttactttgtgacaaatgaa |
23246227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 922 - 993
Target Start/End: Original strand, 23248273 - 23248350
Alignment:
| Q |
922 |
tggtatccgagattgttggttcaggtgtacaattgta------gctcggaaacaactgaaagtgcaatatgatgatgt |
993 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||| |
|
|
| T |
23248273 |
tggtatccgaggctgctggttcaggtgtacaattgtacaggtagctcggaaacaattgaaagtccaatatgatgatgt |
23248350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 762 - 871
Target Start/End: Complemental strand, 36060377 - 36060268
Alignment:
| Q |
762 |
gtttgttcaaattttgctacacaagagtactatagcgccgatata---gcctttagttgacaacattttatagtactaaatagtgtattgtagaacaata |
858 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||| ||||| |||| || || |||| ||||| |||||||||| ||||||| |||||| |
|
|
| T |
36060377 |
gtttgttcaaattttgctatgcaacagtactatagcgcctatatagccgcctctatttcacaatatttt---gtactaaataacgtattgtggaacaaat |
36060281 |
T |
|
| Q |
859 |
gcgatttgttcaa |
871 |
Q |
| |
|
||||||||||||| |
|
|
| T |
36060280 |
gcgatttgttcaa |
36060268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 746 - 874
Target Start/End: Original strand, 9193904 - 9194029
Alignment:
| Q |
746 |
atcgtggaaaacaacagtttgttcaaattttgctacacaagagtactatagcgccgatatagcctttagttgacaacattttatagtactaaatagtgta |
845 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||| || |||||||||| |||||||||||| || | |||||||||| |||| ||||| |||| |
|
|
| T |
9193904 |
atcgtggaaaacaacaatttgttcaaattctgctactgaacagtactatagagccgatatagccactattgaacaacatttt---gtaccaaataatgta |
9194000 |
T |
|
| Q |
846 |
ttgtagaacaatagcgatttgttcaactt |
874 |
Q |
| |
|
|||| ||| || || |||||||||||||| |
|
|
| T |
9194001 |
ttgtggaagaacagtgatttgttcaactt |
9194029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 836 - 871
Target Start/End: Complemental strand, 31322162 - 31322127
Alignment:
| Q |
836 |
aaatagtgtattgtagaacaatagcgatttgttcaa |
871 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31322162 |
aaatagtgtattgtagaacaataacgatttgttcaa |
31322127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 831 - 877
Target Start/End: Original strand, 1912524 - 1912570
Alignment:
| Q |
831 |
gtactaaatagtgtattgtagaacaatagcgatttgttcaactttcg |
877 |
Q |
| |
|
|||||||||||| ||| | |||||||||||||||||||||| ||||| |
|
|
| T |
1912524 |
gtactaaatagtatatcgcagaacaatagcgatttgttcaaatttcg |
1912570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 816 - 867
Target Start/End: Original strand, 14933031 - 14933079
Alignment:
| Q |
816 |
tgacaacattttatagtactaaatagtgtattgtagaacaatagcgatttgt |
867 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
14933031 |
tgacaacatttt---gtactaaatagtgtattgcagaacaatagcggtttgt |
14933079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 831 - 871
Target Start/End: Complemental strand, 34114410 - 34114370
Alignment:
| Q |
831 |
gtactaaatagtgtattgtagaacaatagcgatttgttcaa |
871 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
34114410 |
gtactaaatagcgtattgtggaacaatagcgatttgttcaa |
34114370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 762 - 878
Target Start/End: Original strand, 40213841 - 40213953
Alignment:
| Q |
762 |
gtttgttcaaattttgctacacaagagtactatagcgccgatatagcctttagttgacaacattttatagtactaaatagtgtattgtagaacaatagcg |
861 |
Q |
| |
|
||||||| |||||||||||| ||| ||| ||||||| || ||||||| | ||||||||||||| |||||| |||| |||||| ||||||||| | |
|
|
| T |
40213841 |
gtttgtttaaattttgctacgcaacagtgctatagcaccaatatagctaccatttgacaacatttt---gtactacatagcgtattg-cgaacaatagtg |
40213936 |
T |
|
| Q |
862 |
atttgttcaactttcgc |
878 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
40213937 |
atttgttcaattttcgc |
40213953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 753 - 866
Target Start/End: Original strand, 16690915 - 16691025
Alignment:
| Q |
753 |
aaaacaacagtttgttcaaattttgctacacaagagtactatagcgccgatatagcctttagttgacaacattttatagtactaaatagtgtattgtaga |
852 |
Q |
| |
|
|||| |||||||||||||||||| ||| | ||| ||| |||||| |||| |||| ||| || |||| |||||||| |||||||| ||||| | ||| |
|
|
| T |
16690915 |
aaaataacagtttgttcaaatttcgcttcgcaacagtgctatagtgccgttataccctctatttgaaaacatttt---gtactaaacagtgtgtaacaga |
16691011 |
T |
|
| Q |
853 |
acaatagcgatttg |
866 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
16691012 |
acaatagcgatttg |
16691025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 831 - 878
Target Start/End: Complemental strand, 11530072 - 11530025
Alignment:
| Q |
831 |
gtactaaatagtgtattgtagaacaatagcgatttgttcaactttcgc |
878 |
Q |
| |
|
|||||||||||||||| | |||||||||| ||||||||||| |||||| |
|
|
| T |
11530072 |
gtactaaatagtgtatcgcagaacaatagtgatttgttcaaatttcgc |
11530025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 762 - 871
Target Start/End: Complemental strand, 7347802 - 7347696
Alignment:
| Q |
762 |
gtttgttcaaattttgctacacaagagtactatagcgccgatatagcctttagttgacaacattttatagtactaaatagtgtattgtagaacaatagcg |
861 |
Q |
| |
|
||||||||||||| ||| ||| |||||||||||||| ||||||| || || |||| ||||| |||||||||||||||||| | ||||||||| |
|
|
| T |
7347802 |
gtttgttcaaattacattacgcaacagtactatagcgcctctatagccgctatttcacaatatttt---gtactaaatagtgtattgcaaaacaatagca |
7347706 |
T |
|
| Q |
862 |
atttgttcaa |
871 |
Q |
| |
|
|||||||||| |
|
|
| T |
7347705 |
atttgttcaa |
7347696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 833 - 871
Target Start/End: Complemental strand, 32868311 - 32868273
Alignment:
| Q |
833 |
actaaatagtgtattgtagaacaatagcgatttgttcaa |
871 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
32868311 |
actaaatagtatattgcagaacaatagcgatttgttcaa |
32868273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 833 - 871
Target Start/End: Original strand, 20709976 - 20710014
Alignment:
| Q |
833 |
actaaatagtgtattgtagaacaatagcgatttgttcaa |
871 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
20709976 |
actaaatagcgtattgcagaacaatagcgatttgttcaa |
20710014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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