View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18227_low_10 (Length: 451)

Name: NF18227_low_10
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18227_low_10
NF18227_low_10
[»] chr6 (4 HSPs)
chr6 (17-445)||(663602-664035)
chr6 (213-436)||(908100-908323)
chr6 (17-75)||(907986-908044)
chr6 (215-259)||(10157995-10158039)
[»] chr7 (4 HSPs)
chr7 (108-171)||(44172881-44172944)
chr7 (104-178)||(36314611-36314685)
chr7 (88-154)||(38134414-38134480)
chr7 (214-262)||(36314628-36314676)
[»] chr2 (1 HSPs)
chr2 (214-265)||(44605137-44605188)
[»] chr5 (2 HSPs)
chr5 (92-165)||(16315862-16315935)
chr5 (117-165)||(19625928-19625976)
[»] chr3 (1 HSPs)
chr3 (103-171)||(8039206-8039274)
[»] chr4 (2 HSPs)
chr4 (103-165)||(18513238-18513300)
chr4 (95-144)||(5654609-5654658)
[»] chr8 (1 HSPs)
chr8 (89-154)||(6501481-6501546)
[»] chr1 (2 HSPs)
chr1 (94-171)||(43328458-43328535)
chr1 (217-265)||(40158408-40158456)


Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 445
Target Start/End: Complemental strand, 664035 - 663602
Alignment:
Q  17 ttttgtttgattttgaattttgatctacgctgtattaattagatttgaagtatgaacacctgatacaatatggacattgacatgttgacactgatgataa 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  664035 ttttgtttgattttgaattttgatctacgttgtattaattagatttgaagtatgaacacctgatacaatatggacattgacatgttgacactgatgataa 663936  T
Q  117 tttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgtt-----agtgttagacacacctttgattagaagtgtcgattctaacaccat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||    
T  663935 tttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttgtgttagtgttagacacacctttgattagaagtgtcgattctaacaccat 663836  T
Q  212 ttataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgtt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663835 ttataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgtt 663736  T
Q  312 ggtgctacaaagattttatatacgaacagtttttatggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtga 411  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663735 ggtgctacaaagattatatatatgaacaatttttatggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtga 663636  T
Q  412 atggagttcgcataataatgcagttgatgatgtc 445  Q
    |||||||||||||||||||||||||  |||||||    
T  663635 atggagttcgcataataatgcagtttttgatgtc 663602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 213 - 436
Target Start/End: Original strand, 908100 - 908323
Alignment:
Q  213 tataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttg 312  Q
    |||||||||||||| || |||||||||||| | |||||| ||||||||||||| ||||||||| || | ||||||||||||||||||||||| |||||||    
T  908100 tataatttgagaaatagtcatatttcaatgtacttacatttgtcggtgttagacacttacatgtatcggacacttggcacacctttgataagtagtgttg 908199  T
Q  313 gtgctacaaagattttatatacgaacagtttttatggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaa 412  Q
    |||||||||||||| ||||||  ||||  |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  908200 gtgctacaaagattatatatatcaacaaattttatggtttatgatttacttatgtgaaattttgcctcttttgataccagagaaagcgagaatttgtgaa 908299  T
Q  413 tggagttcgcataataatgcagtt 436  Q
    ||||||| ||||||||||||||||    
T  908300 tggagtttgcataataatgcagtt 908323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 907986 - 908044
Alignment:
Q  17 ttttgtttgattttgaattttgatctacgctgtattaattagatttgaagtatgaacac 75  Q
    |||||||| ||||||| ||||||| |||  |||||||||||||||||||| | ||||||    
T  907986 ttttgtttaattttgagttttgatttaccttgtattaattagatttgaagcacgaacac 908044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 10157995 - 10158039
Alignment:
Q  215 taatttgagaaaaagacatatttcaatgaaattacatgtgtcggt 259  Q
    ||||||||||||| |||||| ||||||| ||| ||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgtcggt 10158039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 44172944 - 44172881
Alignment:
Q  108 tgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 171  Q
    |||| |||||||||||| ||| |||| |||||||||| |||||||||| |||||||||| ||||    
T  44172944 tgataataatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgttgtgttggtgt 44172881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 36314685 - 36314611
Alignment:
Q  104 acactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgttagacac 178  Q
    ||||| || |||||||||||| ||| ||||||||||||||| || ||||||| ||||||| || ||||| |||||    
T  36314685 acactcataataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgttgtcttggtgttggacac 36314611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 38134480 - 38134414
Alignment:
Q  88 ggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 154  Q
    |||||| ||||||||||||| ||| |||||||||||| ||| |||| |||||||||| || ||||||    
T  38134480 ggacatggacatgttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 38134414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 36314676 - 36314628
Alignment:
Q  214 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgtt 262  Q
    |||||||||||||| |||||||||||||| ||| | |||||| ||||||    
T  36314676 ataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgtt 36314628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 44605188 - 44605137
Alignment:
Q  214 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 265  Q
    ||||||||||||||  ||||| ||||||| ||||||||||||||||||||||    
T  44605188 ataatttgagaaaataacataattcaatgtaattacatgtgtcggtgttaga 44605137  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 16315862 - 16315935
Alignment:
Q  92 attgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 165  Q
    |||||||||||||||||||| |||||||||| | |||  ||| || ||||||||||||||| |  |||||||||    
T  16315862 attgacatgttgacactgataataatttgaggaaatgatataattgaatgtaaccacatgtatctgtgttgtgt 16315935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 19625976 - 19625928
Alignment:
Q  117 tttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 165  Q
    |||||||| |||| ||| || ||||||||||||||||| ||||||||||    
T  19625976 tttgagaaaatggaataattgaatgtaaccacatgtgtcagtgttgtgt 19625928  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 8039206 - 8039274
Alignment:
Q  103 gacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 171  Q
    |||||||||||||||||||||| |||||||  |||||||||| || | ||||  ||||||||| |||||    
T  8039206 gacactgatgataatttgagaaaatggcatgattcaatgtaatcataggtgtcggtgttgtgtcagtgt 8039274  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 18513300 - 18513238
Alignment:
Q  103 gacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 165  Q
    ||||| ||| |||||||||||| ||| |||| |||||||||| || |||||| ||||||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgt 18513238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 5654658 - 5654609
Alignment:
Q  95 gacatgttgacactgatgataatttgagaacatggcatatttcaatgtaa 144  Q
    ||||||| ||||||||| |||||||||||| ||| |||| ||||||||||    
T  5654658 gacatgtcgacactgataataatttgagaaaatgacataattcaatgtaa 5654609  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 6501481 - 6501546
Alignment:
Q  89 gacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 154  Q
    |||||||||| |||||||||| | |||||||||||  |||  ||| || |||||||||||||||||    
T  6501481 gacattgacacgttgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgt 6501546  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 43328458 - 43328535
Alignment:
Q  94 tgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 171  Q
    ||||| ||||||||| || |||||||||||| |||  ||| || ||||||||||||||||| | ||| ||||| ||||    
T  43328458 tgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgtcattgtcgtgttggtgt 43328535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 40158456 - 40158408
Alignment:
Q  217 atttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 265  Q
    ||||||||||| ||||||  | |||||||| ||||||||||||||||||    
T  40158456 atttgagaaaatgacataaatgaatgaaatcacatgtgtcggtgttaga 40158408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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