View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_low_11 (Length: 441)
Name: NF18227_low_11
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_11 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 97 - 421
Target Start/End: Complemental strand, 3650399 - 3650066
Alignment:
| Q |
97 |
ttgttacatatgatatggttagtccaaaaacagcgtaagaaaatgattatacaagaagttttacta----tgtcagaattatcagatatagataaggctc |
192 |
Q |
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||||||||||| ||| |||| |||||| ||||| |||||||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
3650399 |
ttgttacatatcataatgttattccaaacacagcttaagaaaatggttata--agaagttttactaattgtgtcagaattatcagaaatagataaggctc |
3650302 |
T |
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| Q |
193 |
ttttaaagtgagcttaactataaaatgtgtaagtttagaatgtatctacagacgattttgtgggcattagggtaaacaatttgtgtataaattgtttcaa |
292 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3650301 |
ttttaaagtgagcttaactataaaatgtgtaagtttaaaatgcatctacagacgattttgtgggcattagggtaaacaatttgtgtataaattgtttcaa |
3650202 |
T |
|
| Q |
293 |
caaaaaagagtagggaacaagggggaactctggactctgtacaag-------nnnnnnnnnnnnnnnaccaaaaaactctgtataagctattctaccaaa |
385 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
3650201 |
caaaaaagagtagggaacaaggcggaactctggactctgtacaagttttttttttttttttttttttaccaaaaaactctgcataagctattctaccaaa |
3650102 |
T |
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| Q |
386 |
ataagcttatgaaaataagctgccagcttatgagta |
421 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3650101 |
ataagcttatgaaaataagctgccagcttatgagta |
3650066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 3706575 - 3706740
Alignment:
| Q |
2 |
tctcttttctgcaaaaatgtgtgtataatcaagctatagag--atgacaaacaaattgtgcaccatgataactactctgtggttactagttagggcgttg |
99 |
Q |
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| T |
3706575 |
tctcttttctgcaaaaatgtgtatatgatcaagttgtagagagatgacaaacaaattgtgcaccatgataactagtctgttgttgcttgttagggcattg |
3706674 |
T |
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| Q |
100 |
ttacatatgatatggttagtccaaaaacagcgtaagaaaatgattatacaagaagttttactatgtca |
167 |
Q |
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| T |
3706675 |
ttacatatgataaggttattccaaacacagtgtaagaaaatgat--tacaagaagttttactatgtca |
3706740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 167
Target Start/End: Complemental strand, 3650962 - 3650797
Alignment:
| Q |
2 |
tctcttttctgcaaaaatgtgtgtataatcaa--gctatagagatgacaaacaaattgtgcaccatgataactactctgtggttactagttagggcgttg |
99 |
Q |
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|||||||||||||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||||| ||||| ||| || |||||||| ||| |
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| T |
3650962 |
tctcttttctgcaaaaatgtgtatatgatcaaattgtagagagatgacaaacaaattgtgcaccatgataactagtctgttgttgcttgttagggcattg |
3650863 |
T |
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| Q |
100 |
ttacatatgatatggttagtccaaaaacagcgtaagaaaatgattatacaagaagttttactatgtca |
167 |
Q |
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| T |
3650862 |
ttacatatgataaggttattccaaacacagtgtaagaaaatgat--tacaagaagttttactatgtca |
3650797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 3659007 - 3658898
Alignment:
| Q |
2 |
tctcttttctgcaaaaatgtgtgtataatcaagctatagagatgacaaacaaattgtgcaccatgataactactctgtggttactagttagggcgttgtt |
101 |
Q |
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|||||| | |||||| |||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||| |
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| T |
3659007 |
tctcttatgtgcaaacatgtgtgtatggtcaagttatagagatgacaaaaaaattgtgcaccatgataactagtctgttgttactagttagggcactgtt |
3658908 |
T |
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| Q |
102 |
acatatgata |
111 |
Q |
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|| ||||||| |
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| T |
3658907 |
acgtatgata |
3658898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 3652837 - 3652748
Alignment:
| Q |
2 |
tctcttttctgcaaaaatgtgtgtataatcaagctatagagatgacaaacaaattgtgcaccatgataactactctgtggttactagttagg |
93 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||| ||| |||| |
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| T |
3652837 |
tctcttttctgcaaaaatgtgt--ataatcaagttatagagatgacaaacaaattgtgcaccatgataattagtctgttgttagtagatagg |
3652748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 3639476 - 3639418
Alignment:
| Q |
159 |
actatgtcagaattatcagatatagataaggctcttttaaagtgagcttaactataaaa |
217 |
Q |
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||||| ||||||| |||||| ||||||||||||||||||| ||||||| ||||||||| |
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| T |
3639476 |
actatttcagaatcatcagaaatagataaggctcttttaatttgagcttgactataaaa |
3639418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 3645758 - 3645700
Alignment:
| Q |
159 |
actatgtcagaattatcagatatagataaggctcttttaaagtgagcttaactataaaa |
217 |
Q |
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||||||| ||||| |||||| ||||||||||||||||||| ||||||| ||||||||| |
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| T |
3645758 |
actatgtgagaatcatcagaaatagataaggctcttttaatttgagcttgactataaaa |
3645700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 3639609 - 3639535
Alignment:
| Q |
36 |
tatagagatgacaaacaaattgtgcaccatgataactactctgtggttactagttagggcgttgttacatatgata |
111 |
Q |
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| T |
3639609 |
tatagagatgataaacaaatcgtgcaccatgataattagtct-ttgttactagttaagacatagttacatatgata |
3639535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 3637134 - 3637077
Alignment:
| Q |
159 |
actatgtcagaattatcagatatagataaggctcttttaaagtgagcttaactataaa |
216 |
Q |
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| T |
3637134 |
actatgtcagactcaccagaaatggacaaggctcttttaaagtgaacttaactataaa |
3637077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 3658809 - 3658765
Alignment:
| Q |
198 |
aagtgagcttaactataaaatgtgtaagtttagaatgtatctaca |
242 |
Q |
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| T |
3658809 |
aagtgagcttaactataaaatgcttaagttgaaaatgtatctaca |
3658765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 8951 - 9008
Alignment:
| Q |
159 |
actatgtcagaattatcagatatagataaggctcttttaaagtgagcttaactataaa |
216 |
Q |
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||||||||||| | | |||| || || |||||||||||||||||| |||||||||||| |
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| T |
8951 |
actatgtcagactcaccagaaatggacaaggctcttttaaagtgaacttaactataaa |
9008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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