View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_low_12 (Length: 441)
Name: NF18227_low_12
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 23 - 420
Target Start/End: Original strand, 28104061 - 28104458
Alignment:
| Q |
23 |
tgctgcaacagtttgtgttattcgagtcagtggtgttctgctgtatttctttttgcgttttgctgccttggtttattttcctggtcactccaaatccttt |
122 |
Q |
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| T |
28104061 |
tgctgcatcagtttgtgttattcgagtcagtggtgttctgctgtatttctttttgcgttttgctgccttggtttattttcctggtcactccaaatccttt |
28104160 |
T |
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| Q |
123 |
tggacggttgtgccaattttgtttttgagcggtggtgtggtgtgttggcaggtttggctatgaacggtggtttttggtcagcagattttgtactgcacag |
222 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28104161 |
tggacggttgtgccagttttgtttttgagcggtggtgtggtgtgttggcaggtttggctatgaacggtggtttttggtcagcagattttgtactgcacag |
28104260 |
T |
|
| Q |
223 |
tggctttttgttcttgctgcaattcattttatggctgctatattttttgctacggttttgtgacttctgcagagctttgttctgttagtatttagctttt |
322 |
Q |
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| T |
28104261 |
tggctttttgttcttgctgcaattcattttatggctgctatattttttgctacggttttgtgacttctgcagagctttgttctgttagtatttagctttt |
28104360 |
T |
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| Q |
323 |
gatgcctttttgtggcttagtgttattaggctttgtttttggctttggggaaatttcgcttgttgttctgtttcaaatgagcgtggtatatctgtcat |
420 |
Q |
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| T |
28104361 |
gatgcctttttgtggcttagtgttattaggctttgtttttggctgtggggaaatttcgcttgttgttctgtttcaaatgagggtggtatatctgtcat |
28104458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 23 - 420
Target Start/End: Original strand, 26640987 - 26641381
Alignment:
| Q |
23 |
tgctgcaacagtttgtgttattcgagtcagtggtgttctgctgtatttctttttgcgttttgctgccttggtttattttcctggtcactccaaatccttt |
122 |
Q |
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||||||| |||||||| ||||| ||||||||||||||||| || ||| |||||| ||| ||||||||||||||| ||||||||||||||||||| || |
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| T |
26640987 |
tgctgcatcagtttgtattatttgagtcagtggtgttctgttgcatta-tttttgtgtt---ctgccttggtttattgtcctggtcactccaaatccgtt |
26641082 |
T |
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| Q |
123 |
tggacggttgtgccaattttgtttttgagcggtggtgtggtgtgttggcaggtttggctatgaacggtggtttttgg-tcagcagattttgtactgcaca |
221 |
Q |
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| T |
26641083 |
tggactgttgtgccagttttgattttgagcggtggtgtggtgcgttggcaggtttggctttaagtggtggtttttcgatctgcagattttgtaccgcata |
26641182 |
T |
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| Q |
222 |
gtggctttttgttcttgctgcaattcattttatggctgctatattttttgctacggttttgtgacttctgcagagctttgttctgttagtatttagcttt |
321 |
Q |
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| T |
26641183 |
gtggctttttgtacttgctgcaatgcattctaaggctgctatatttggttctacagttttgtgacttctgctgagctttgttccgttagtatttagcttc |
26641282 |
T |
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| Q |
322 |
tgatgcctttttgtggcttagtgttattaggctttgtttttggctttggggaaatttcgcttgttgttctgtttcaaatgagcgtggtatatctgtcat |
420 |
Q |
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|||||| ||| ||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||| |
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| T |
26641283 |
tgatgcttttctgtggcttagtattattaggctttgtttttggctttggggcaatttccgttgttgttctgtttcaagtgagcgtggtgtatctgtcat |
26641381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 28101304 - 28101377
Alignment:
| Q |
25 |
ctgcaacagtttgtgttattcgagtcagtggtgttctgctgtatttctttttgcgttttgctgccttggtttatt |
99 |
Q |
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||||||| |||||| ||||||||||| |||||||||||||| | || ||||||| || | |||||||||||||| |
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| T |
28101304 |
ctgcaactgtttgtattattcgagtctgtggtgttctgctgca-ttgtttttgcattctaatgccttggtttatt |
28101377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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