View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_low_14 (Length: 403)
Name: NF18227_low_14
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 386
Target Start/End: Complemental strand, 11502700 - 11502324
Alignment:
| Q |
11 |
cagagatgaaacccctgtacccaaagagctcaaatcttttacgactaagatcaatcgattcttgttgctgattatgaaaatgttaaatgaaggaataaaa |
110 |
Q |
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| T |
11502700 |
cagagatgaaacccctgtactcaaagagctcaaatcttttacgactaagatcaatcgattcttgttgctgattatgaaaatgttaaatgaaggaataaaa |
11502601 |
T |
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| Q |
111 |
cctttatctatgtagtattgaaaatgatcatgtccaaagtcaactaacaaccaaacgagcatgctgagaagcaagcaactaacaaccaatctataatatt |
210 |
Q |
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| T |
11502600 |
cctttatctatgtagtattgaaaatgaccatgtccaaagtcaactaacaaccaaacgagcatgctgagaagcaagcaactaacaaccaatctataatatt |
11502501 |
T |
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| Q |
211 |
-nnnnnnntacttttttgaataaatctctaatattaaaattgaaacaagcattttgaattgaatcaatcaataattcaatataaacatatagtaatcaat |
309 |
Q |
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| T |
11502500 |
aaaaaaaatatttttttgaataaatctctaatattaaaattgaaacaagcattttgaattgaatcaatcaataattcaatataaacatatagtaatcaat |
11502401 |
T |
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| Q |
310 |
catattgtccacattacaaaccagaaaaaatgggtcaattagatctggaaaagcactttgcattctatggcgcttat |
386 |
Q |
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| T |
11502400 |
catattgtccacattacaaaccagaaaaaatgggtctattagatctggaaaagcactttgcattctatggcgcttat |
11502324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 11485235 - 11485191
Alignment:
| Q |
335 |
aaaaatgggtcaattagatctggaaaagcactttgcattctatgg |
379 |
Q |
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| T |
11485235 |
aaaaatgggtctattagatctggaaaagcactttgctttctatgg |
11485191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 383
Target Start/End: Complemental strand, 11507899 - 11507850
Alignment:
| Q |
334 |
aaaaaatgggtcaattagatctggaaaagcactttgcattctatggcgct |
383 |
Q |
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||||||||| | |||||||||||||||||||||||| ||||| |||||| |
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| T |
11507899 |
aaaaaatggatatattagatctggaaaagcactttgccttctacggcgct |
11507850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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