View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_low_15 (Length: 389)
Name: NF18227_low_15
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 370
Target Start/End: Complemental strand, 34192324 - 34191965
Alignment:
| Q |
12 |
attatactagagacaattagtggaaacaagaaccgggaatattgtgactatgatgatcttgatcttcttggatatgtaagcctaaggatttagtccactt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34192324 |
attatactagagacaattagtggaaacaagaaccgggaatattgtgactatgatgatcttgatcttcttggatatgtaagtctaaggatttagtccactt |
34192225 |
T |
|
| Q |
112 |
gaaacaacatatgtattggcatattcaaagcagtgttgtcaatcacgtatcgcaaaaagccatttgacaacattttcattaaattgtttatcgcc-aaaa |
210 |
Q |
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| T |
34192224 |
gaaacaacatatgtattggcatattcaaagcagtgttgtcaatcacgtattgcaaaaagccatttgacaacattttcattaaattgtttatcgccgaaca |
34192125 |
T |
|
| Q |
211 |
atatcattttgtagcactattatgttactatgtctttttgataacactgattgaaaagtaaactcaaaactcactatcttaacttttgtatccttaggca |
310 |
Q |
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||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34192124 |
ataacattttgtagcactattatgttactatatctttttgataacactgattgaaaagtaaactcaaaactcactatcttaacttttgtatccttaggca |
34192025 |
T |
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| Q |
311 |
tggagattgtggagcgaaacaacgccgttggagctgatagaagaatcgctacgcgattcc |
370 |
Q |
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| T |
34192024 |
tggagattgtggagcgaaacaacgccgttggagctgatagaagaatcgctacgcgattcc |
34191965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 34219332 - 34219423
Alignment:
| Q |
12 |
attatactagagacaattagtggaaacaagaaccgggaatattgtgactatgatgatcttgatcttcttggatatgtaagcctaaggattta |
103 |
Q |
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| T |
34219332 |
attatactagagataattagtggaaacaagaacagggaatattgtgactatcatggccttgatcttcttggatatgtaagtctaaggcttta |
34219423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 34208176 - 34208311
Alignment:
| Q |
12 |
attatactagagacaattagtggaaacaagaaccgggaatattgtgactatgatgatcttgatcttcttggatatgtaagcctaaggatttagtccactt |
111 |
Q |
| |
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||||||||||||||||| | |||||| |||||| |||||||| ||||| || |||||||||| ||||||||||||||||| ||| |||| |||||| | |
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| T |
34208176 |
attatactagagacaataactggaaaaaagaacagggaatatagtgaccatcatgatcttgaccttcttggatatgtaagtataatgattcagtcca-at |
34208274 |
T |
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| Q |
112 |
gaaacaacatatgtattggcatattcaaagcagtgtt |
148 |
Q |
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| T |
34208275 |
aaaacaacatatgttttggtacattgaaaacagtgtt |
34208311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 369
Target Start/End: Original strand, 34208442 - 34208559
Alignment:
| Q |
253 |
aacactgattgaaaagtaaactcaaaactcactatcttaacttttgtatcct-taggcatggagattgtggagcgaaacaacgccgttggagctgataga |
351 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||| ||| | |||| |||||||||||| ||||| | || ||||||||||| ||||||||| |
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| T |
34208442 |
aacaatgattgaaaagtaaactcaaaactcacaatcttaattttcatgtcctctaggcatggagaatgtggtgtgactcaacgccgttgatgctgataga |
34208541 |
T |
|
| Q |
352 |
agaatcgctacgcgattc |
369 |
Q |
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||||| ||| ||||||| |
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| T |
34208542 |
tgaatctctaagcgattc |
34208559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 369
Target Start/End: Original strand, 34219603 - 34219727
Alignment:
| Q |
247 |
tttgataacactgattgaaaagtaaact-caaaactcactatcttaacttttgtatcct-taggcatggagattgtggagcgaaacaacgccgttggagc |
344 |
Q |
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||||| |||||||||||||||||||| | ||||||||| ||||||| ||| || |||| |||||||||||| ||||| ||||| || || |||||| | |
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| T |
34219603 |
tttgacaacactgattgaaaagtaaattgaaaaactcacaatcttaattttcgtgtcctctaggcatggagaatgtggtccgaaaaaatgcagttggaac |
34219702 |
T |
|
| Q |
345 |
tgatagaagaatcgctacgcgattc |
369 |
Q |
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||||||| |||| ||| ||||||| |
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| T |
34219703 |
tgatagatgaatgtctaggcgattc |
34219727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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