View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_low_16 (Length: 389)
Name: NF18227_low_16
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 40764773 - 40764404
Alignment:
| Q |
1 |
gaactctaaaagcagcatctgaaccggaaactaaacttaaaagctacagtccccctccttctcctgttagaacaaattaatccacttgatatggtagatg |
100 |
Q |
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| T |
40764773 |
gaactctaaaagcagcatctgaaccggaaactaaacttaaaagctacagtccccctccttctcctgttagaacaaattaatccacttgatatggtagatg |
40764674 |
T |
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| Q |
101 |
agaactgtatacaaacattagacaattctcatctaaagtataattggcctgaacttccattagatgcaatccatcatgttgattcatttccaaaattttg |
200 |
Q |
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| T |
40764673 |
agaactgtatacaaacattagacagttctcatctaaagtataattggcctgaacttccattagatgcaatccatcatgttgattcatttccaaaattttg |
40764574 |
T |
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| Q |
201 |
caaagtattatgcagctcggttagaataggatttaacttgatagatagtgtttcattgtattatatgaaatgaaacgttcacaccgaagttatggaattt |
300 |
Q |
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| T |
40764573 |
caaagtattatgcagctcggttagaataggatttaacttgatagatagtgtttcattgta-tatatgaaatgaaacgttcacaccgaagttatggaattt |
40764475 |
T |
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| Q |
301 |
tgagtttgttatggagaaaaaagcaaaaggaaatggtgcctcaagtatttgattcccttgcagatgaagaa |
371 |
Q |
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| T |
40764474 |
tgagtttgttatggagaaaaaagcaaaaggaaatggtgcctcaagtatttgattcccttgcaaatgaagaa |
40764404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 143 - 366
Target Start/End: Complemental strand, 40777259 - 40777035
Alignment:
| Q |
143 |
attggcctgaacttccattagatgcaatccatcatgttgattcatttccaaaattttgcaaagtattatgcagctcggttagaataggatttaacttgat |
242 |
Q |
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| T |
40777259 |
attggcctgaacgtccattggatgcaattcatgatgttgactcgactccaaaattgcgtagagtactaagcagttcagctagaattggcttaaaccttat |
40777160 |
T |
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| Q |
243 |
agatagtgtttcattgtattat-atgaaatgaaacgttcacaccgaagttatggaattttgagtttgttatggagaaaaaagcaaaaggaaatggtgcct |
341 |
Q |
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| T |
40777159 |
ggatagtgcttccttgtatggttatggaatgaagcgttcacaccaaagttctggaaatttgaatttgttatggagagaaaagcaacaagaaatgatgcct |
40777060 |
T |
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| Q |
342 |
caagtatttgattcccttgcagatg |
366 |
Q |
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| T |
40777059 |
aaagtatttgattcccttgctgatg |
40777035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 40770435 - 40770344
Alignment:
| Q |
266 |
tgaaatgaaacgttcacaccgaagttatggaattttgagtttgttatggagaaaaaagcaaaaggaaatggtgcctcaagtatttgattccc |
357 |
Q |
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| T |
40770435 |
tgaaatgaaaagtttacaccaaagttctggaaatttcagtttgttatggagtgaaaagcaacaggaaatagtgcctcaagtatttgattccc |
40770344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 40770535 - 40770483
Alignment:
| Q |
143 |
attggcctgaacttccattagatgcaatccatcatgttgattcatttccaaaa |
195 |
Q |
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| T |
40770535 |
attggcctgaacttcggttagatccaatccatcatgttgattcatctccaaaa |
40770483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 40777434 - 40777374
Alignment:
| Q |
18 |
tctgaaccggaaactaaacttaaaagctacagtccccctccttctcctgttagaacaaatt |
78 |
Q |
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| T |
40777434 |
tctgaacccgaaactaaacagaaaagctatagtgcccctccttctcctattagaacaaatt |
40777374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 162 - 360
Target Start/End: Complemental strand, 10128350 - 10128152
Alignment:
| Q |
162 |
agatgcaatccatcatgttgattcatttccaaaattttgcaaagtattatgcagctcggttagaataggatttaacttgatagatagtgtttcattgtat |
261 |
Q |
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|||| |||||||| |||||||||| |||| |||| || |||| || ||||||| | |||||| ||||||||||||||||||||| |||||||||| |
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| T |
10128350 |
agatacaatccattatgttgattcgattccgaaatcgtgttgagtactaagcagctcagctagaatgagatttaacttgatagatagtgcttcattgtat |
10128251 |
T |
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| Q |
262 |
tat-atgaaatgaaacgttcacaccgaagttatggaattttgagtttgttatggagaaaaaagcaaaaggaaatggtgcctcaagtatttgattcccttg |
360 |
Q |
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| T |
10128250 |
ggttatggaatgaaacgttcacaccaaagttctggaaatttcagtttgttatggagagaaaagcaaaaggaaatggtgcctcaagta-ttgattcccttg |
10128152 |
T |
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