View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18227_low_18 (Length: 382)
Name: NF18227_low_18
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 8417202 - 8417549
Alignment:
| Q |
18 |
ccttgaatatgttaatcggtgtaagtagtctttgaatgtattacaaaaacatatatgatttttgttagttaatatggtcctctatatgtatttcatttgt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8417202 |
ccttgaatatgttaatcggtgtaagtagtctttgaatgtattacaaaaacatatatgatttttgttagttaatatggtcctctatatgtatttcatttgt |
8417301 |
T |
|
| Q |
118 |
tagtttgatctatgaaattactaacagattaaacacttacggatgtttttgaagttccgtacattcaaataccgtaccacaagttcaaagactaaactca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8417302 |
tagtttgatctatgaaattactaacagattaaacacttacggatgtttttgaagttccgtacattcaaataccgtcccacaagttcaaagactaaactca |
8417401 |
T |
|
| Q |
218 |
tttgtattttaatgttcataacatctccgcatttgcgtaaaatatccatttaatatataatgtctgctattcatttgaattgtgcaggaattccgcttaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8417402 |
tttgtattttaatgttcataacatctccgcatttgcgtaaaatatccattta----ataatgtctgctattcatttgaattgtgcaggaattccgcttaa |
8417497 |
T |
|
| Q |
318 |
atcccatttcgaagaaagcacaacctccacgctttgttagattggagttgtt |
369 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
8417498 |
atcccatttcgaagaaagcgcaacctccacgctttgttagattggagttgtt |
8417549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 8035632 - 8035268
Alignment:
| Q |
20 |
ttgaatatgttaatcggtgtaagtagtctttgaatgtattacaaaaacatatatgat-------ttttgttagttaatatggtcctcta-tatgtatttc |
111 |
Q |
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|||||||||||| | ||||| ||||||||||||||||||||| ||||||||| ||| |||| ||| | || ||||||||| ||||||||| |
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| T |
8035632 |
ttgaatatgttagttggtgttagtagtctttgaatgtattacgaaaacatatctgaacttgtcattttcttatccacta-ggtcctctaatatgtatttt |
8035534 |
T |
|
| Q |
112 |
atttgttagtttgatctatgaaattactaacagattaaacacttacggatgtttttgaagttccgtacattcaaataccgta-----------ccacaag |
200 |
Q |
| |
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||||| |||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||| ||||| | |
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| T |
8035533 |
atttgctagtttgatctacgaaattactaacagattacacacatacggatgtttttgaagctccgtacattcaaatactgtagggaaactgccccacacg |
8035434 |
T |
|
| Q |
201 |
ttcaaagactaaactcatttgtatttt-aatgttcataacatctccgcatttgcgtaaaatatccatttaatatataatgtctgctattcatttgaattg |
299 |
Q |
| |
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||||| | ||||||||||||||||||| |||||| |||||||||| ||||| ||||||||||||||||||| |||||| ||||||||| |||||| |
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|
| T |
8035433 |
ttcaatggctaaactcatttgtatttttaatgtttataacatctctgcattcatgtaaaatatccatttaata----atgtctcctattcattcgaattg |
8035338 |
T |
|
| Q |
300 |
tgcaggaattccgcttaaatcccatttcgaagaaagcacaacctccacgctttgttagattggagttgtt |
369 |
Q |
| |
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|||||| ||||| ||||||||| | ||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
8035337 |
tgcaggtattcctcttaaatccaacttcgaagaatttgcaacctccacgctttgttagattggagttgtt |
8035268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 101 - 367
Target Start/End: Original strand, 8411688 - 8411951
Alignment:
| Q |
101 |
atatgtatttcatttgttagtttgatctatgaaattactaacagattaaacacttacggatgtttttgaagttccgtacattcaaataccgtaccacaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| | ||||| | |
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| T |
8411688 |
atatgtatttcatttgttagtttgatctatgaaataactaacagattacacacttacggatgtttttgaagttctgtacattcaaatactgccccacatg |
8411787 |
T |
|
| Q |
201 |
ttcaaagactaaactcatttgta-ttttaatgttcataacatctccgcatttgcgtaaaatatccatttaatatataatgtctgctattcatttgaattg |
299 |
Q |
| |
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||||| |||||||||||| |||| ||||||||||||||||||||| ||||| ||||| | ||||||||| ||||||| | ||||| ||| ||||| |
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| T |
8411788 |
ttcaacgactaaactcatctgtatttttaatgttcataacatctctgcattcacgtaatacatccattta----ataatgtatcctatttattcaaattg |
8411883 |
T |
|
| Q |
300 |
tgcaggaattccgcttaaatcccatttcgaagaaagcacaacctccacgctttgttagattggagttg |
367 |
Q |
| |
|
||||||| |||| ||||||| | | |||||| || |||||||||| |||||||||||||||||| |
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|
| T |
8411884 |
tgcaggacttcctcttaaatacaacttcgaaaaactttcaacctccacagtttgttagattggagttg |
8411951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 215 - 369
Target Start/End: Complemental strand, 8040845 - 8040694
Alignment:
| Q |
215 |
tcatttgtatt-ttaatgttcataacatctccgcatttgcgtaaaatatccatttaatatataatgtctgctattcatttgaattgtgcaggaattccgc |
313 |
Q |
| |
|
||||||||||| |||||||| ||||||| || ||||| |||||||||||||| ||||| |||||| ||||||||| |||||||||||||||||||| |
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|
| T |
8040845 |
tcatttgtattcttaatgtttataacatatctgcattcacgtaaaatatccatataata----atgtctcctattcattcgaattgtgcaggaattccgc |
8040750 |
T |
|
| Q |
314 |
ttaaatcccatttcgaagaaagcacaacctccacgctttgttagattggagttgtt |
369 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||| ||||||||||||||| |
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|
| T |
8040749 |
ttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattggagttgtt |
8040694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 274 - 367
Target Start/End: Complemental strand, 9138096 - 9138003
Alignment:
| Q |
274 |
ataatgtctgctattcatttgaattgtgcaggaattccgcttaaatcccatttcgaagaaagcacaacctccacgctttgttagattggagttg |
367 |
Q |
| |
|
||||||||| |||||||| || | |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
9138096 |
ataatgtctcttattcattcgaggtttgcaggaattcctcttaaatcccatttcgaagaaagtgcaacctccacgctttgttaaattggagttg |
9138003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 8040997 - 8040860
Alignment:
| Q |
18 |
ccttgaatatgttaatcggtgtaagtagtctttgaatgtattacaaaaacatatatga-------tttttgttagttaatatggtcctct-atatgtatt |
109 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||| ||| | || || ||||| | ||||||| |
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| T |
8040997 |
ccttgaatatgttaatccgtgtaagtagtctttgaatgtattacaaaaacatatccgaatttgtcattttctta-tcaacttgagcctctaagatgtatt |
8040899 |
T |
|
| Q |
110 |
tcatttgttagtttgatctatgaaattactaacagatta |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8040898 |
tcatttgttagtttgatctatgaaattactaacagatta |
8040860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 43144000 - 43143942
Alignment:
| Q |
86 |
ttaatatggtcctcta-tatgtatttcatttgttagtttgatctatgaaattactaaca |
143 |
Q |
| |
|
||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
43144000 |
ttaatttggtcctctaatatgtctttcatttgttagtttgatctatgaaattactaaca |
43143942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 9138200 - 9138147
Alignment:
| Q |
18 |
ccttgaatatgttaatcggtgtaagtagtctttgaatgtattacaaaaacatat |
71 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
9138200 |
ccttgaatatgttggtcggtgttagtagtctttgaatgtattacaaaaacatat |
9138147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 8419084 - 8419157
Alignment:
| Q |
76 |
tttttgttagttaatatggtcctcta-tatgtatttcatttgttagtttgatctatgaaattactaacagatta |
148 |
Q |
| |
|
||||||||| |||| |||||||||| ||||| |||||||| |||||||||| |||||||||||||||| |||| |
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|
| T |
8419084 |
tttttgttacttaagttggtcctctaatatgtctttcatttattagtttgatatatgaaattactaacaaatta |
8419157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 365
Target Start/End: Complemental strand, 8355513 - 8355459
Alignment:
| Q |
311 |
cgcttaaatcccatttcgaagaaagcacaacctccacgctttgttagattggagt |
365 |
Q |
| |
|
|||| |||||||||||| |||||||| ||||||||| ||||||||| |||||||| |
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|
| T |
8355513 |
cgctcaaatcccatttcaaagaaagctcaacctccatgctttgttaaattggagt |
8355459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 8419321 - 8419366
Alignment:
| Q |
108 |
tttcatttgttagtttgatctatgaaattactaacagattaaacac |
153 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
8419321 |
tttcatttgttagtttgatctataaaattactaacaaattacacac |
8419366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 8404604 - 8404637
Alignment:
| Q |
42 |
gtagtctttgaatgtattacaaaaacatatatga |
75 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
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|
| T |
8404604 |
gtagtctttgaatgtattacaaaaacatttatga |
8404637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 8411594 - 8411635
Alignment:
| Q |
33 |
tcggtgtaagtagtctttgaatgtattacaaaaacatatatg |
74 |
Q |
| |
|
||||||| ||| ||||||||||||| |||||||||||||||| |
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|
| T |
8411594 |
tcggtgtcagtggtctttgaatgtactacaaaaacatatatg |
8411635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 33084755 - 33085083
Alignment:
| Q |
20 |
ttgaatatgttaatcggtgtaagtagtctttgaatgtattacaaaaacatatatga--tt----tttgttagttaatatggtcctcta-tatgtatttca |
112 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| || |||||||||||||||||| ||| || |||| | | || || ||||||| ||||||||||| |
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|
| T |
33084755 |
ttgaatatgttagtcggtgttagtagtcttcgattgtattacaaaaacatatctgaaattgtcatttgcttatcaacttgatcctctaatatgtatttca |
33084854 |
T |
|
| Q |
113 |
tttgttagtttgatctatgaaattactaacagattaaacacttacggatgtttttgaagttccgtacattcaaataccgta-----------ccacaagt |
201 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||| || |
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|
| T |
33084855 |
tttgttagtttgatgtatgaaattactaacagattacacacttacggatgtttttgaagttccgtacattcaaatactgtagggaaactgccccacacgt |
33084954 |
T |
|
| Q |
202 |
tcaaagactaaactcatttgta-ttttaatgttcataacatctccgcatttgcgtaaaatatccatttaatatataatgtctgctattcatttgaattgt |
300 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| |||||||| ||||||| |
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|
| T |
33084955 |
tcaacgactaaactcatttgtatttttaatgttcataacatctttgcattcacgtaaaatatccattta----ataatgtctcttattcattcgaattgt |
33085050 |
T |
|
| Q |
301 |
gcaggaattccgcttaaatcccatttcgaagaa |
333 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||| |
|
|
| T |
33085051 |
gcaggaattcctcttaaatccaacttcgaagaa |
33085083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 5477167 - 5477200
Alignment:
| Q |
42 |
gtagtctttgaatgtattacaaaaacatatatga |
75 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
5477167 |
gtagtctttgaatgtattacaaaaacatctatga |
5477200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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