View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18227_low_20 (Length: 377)

Name: NF18227_low_20
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18227_low_20
NF18227_low_20
[»] chr1 (16 HSPs)
chr1 (213-348)||(39585648-39585783)
chr1 (147-196)||(26585810-26585859)
chr1 (19-55)||(39585620-39585656)
chr1 (149-196)||(1852882-1852929)
chr1 (149-196)||(3603204-3603251)
chr1 (154-197)||(8411648-8411691)
chr1 (149-196)||(20565049-20565096)
chr1 (149-196)||(36779200-36779247)
chr1 (149-196)||(46082052-46082099)
chr1 (56-86)||(902638-902668)
chr1 (56-86)||(1852992-1853022)
chr1 (154-196)||(26837550-26837592)
chr1 (56-86)||(33024612-33024642)
chr1 (154-196)||(38303619-38303661)
chr1 (53-86)||(3603108-3603141)
chr1 (147-196)||(51191879-51191928)
[»] chr6 (5 HSPs)
chr6 (149-214)||(4820346-4820411)
chr6 (149-194)||(3610894-3610939)
chr6 (149-196)||(5327522-5327569)
chr6 (56-86)||(30036835-30036865)
chr6 (54-86)||(35213602-35213634)
[»] chr5 (6 HSPs)
chr5 (147-192)||(21064161-21064206)
chr5 (149-197)||(6930989-6931037)
chr5 (149-197)||(33620701-33620749)
chr5 (149-196)||(5042341-5042388)
chr5 (55-86)||(35099046-35099077)
chr5 (53-81)||(41175752-41175780)
[»] chr3 (13 HSPs)
chr3 (147-196)||(39671028-39671077)
chr3 (147-196)||(54028033-54028082)
chr3 (147-196)||(43905064-43905113)
chr3 (53-86)||(46982943-46982976)
chr3 (149-196)||(10206904-10206951)
chr3 (149-196)||(29634003-29634050)
chr3 (149-196)||(37508429-37508476)
chr3 (149-196)||(39020090-39020137)
chr3 (149-196)||(54773684-54773731)
chr3 (154-196)||(390907-390949)
chr3 (56-86)||(8821630-8821660)
chr3 (56-86)||(39671139-39671169)
chr3 (147-196)||(28419145-28419194)
[»] chr7 (12 HSPs)
chr7 (149-196)||(39332078-39332125)
chr7 (147-196)||(13906388-13906437)
chr7 (147-196)||(37808695-37808744)
chr7 (149-197)||(41402601-41402649)
chr7 (149-196)||(13163012-13163059)
chr7 (149-204)||(40353357-40353411)
chr7 (56-87)||(41025761-41025792)
chr7 (56-86)||(13162919-13162949)
chr7 (147-196)||(21023048-21023097)
chr7 (53-86)||(39331982-39332015)
chr7 (53-81)||(22638930-22638958)
chr7 (55-87)||(46148003-46148035)
[»] chr4 (19 HSPs)
chr4 (149-196)||(12112720-12112767)
chr4 (154-196)||(25317997-25318039)
chr4 (147-196)||(14451484-14451533)
chr4 (149-196)||(36111326-36111373)
chr4 (149-196)||(41486074-41486121)
chr4 (149-196)||(42959365-42959412)
chr4 (149-196)||(50273004-50273051)
chr4 (56-86)||(624353-624383)
chr4 (190-220)||(5932038-5932068)
chr4 (56-86)||(39312645-39312675)
chr4 (189-219)||(39344861-39344891)
chr4 (149-190)||(6141715-6141756)
chr4 (147-196)||(26206908-26206957)
chr4 (54-87)||(26207017-26207050)
chr4 (147-196)||(33899257-33899306)
chr4 (147-196)||(51194360-51194409)
chr4 (46-86)||(5932198-5932238)
chr4 (54-86)||(14451391-14451423)
chr4 (55-87)||(42667217-42667249)
[»] chr2 (5 HSPs)
chr2 (149-196)||(433943-433990)
chr2 (149-196)||(670403-670450)
chr2 (147-196)||(17779473-17779522)
chr2 (147-190)||(42223889-42223932)
chr2 (56-86)||(18176940-18176970)
[»] chr8 (8 HSPs)
chr8 (152-196)||(37783902-37783946)
chr8 (149-196)||(30135946-30135993)
chr8 (149-196)||(34591357-34591404)
chr8 (149-196)||(45529177-45529224)
chr8 (147-196)||(36110229-36110278)
chr8 (54-86)||(16613632-16613664)
chr8 (55-87)||(38708336-38708368)
chr8 (149-197)||(41521061-41521109)
[»] scaffold0471 (1 HSPs)
scaffold0471 (147-196)||(98-147)


Alignment Details
Target: chr1 (Bit Score: 104; Significance: 9e-52; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 213 - 348
Target Start/End: Original strand, 39585648 - 39585783
Alignment:
Q  213 ttaaggaatagacactttcattatttgcatggaggaatacaagacgctaactcatggcaaacttatgcaaattgtcaaaatcaataaatgtctcctacgg 312  Q
    ||||||||||||| ||| ||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  39585648 ttaaggaatagacccttccattaattgcatggaggaatataagaggctaactcatgccaaacttatgcaaattgtcaaaatcaataaatgactcctacgg 39585747  T
Q  313 tctcactctcatgtcaatgatgtcatgttccttgaa 348  Q
    ||||||||||||||||||| ||||||||||||||||    
T  39585748 tctcactctcatgtcaatggtgtcatgttccttgaa 39585783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 26585859 - 26585810
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||| |||||||||||||||| |||||||| ||||||| |||||||||    
T  26585859 gttatggtttccgtgtcaataccacttttttctttgtaaagtatggttgt 26585810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 39585620 - 39585656
Alignment:
Q  19 gtttgtccatatgtcaatataaagatatttaaggaat 55  Q
    |||||||||||||| ||||||||||||||||||||||    
T  39585620 gtttgtccatatgtaaatataaagatatttaaggaat 39585656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 1852929 - 1852882
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||| ||||||| |||||||| |||||||||||||||||    
T  1852929 tatggtttccgtgccaataccacttttttctttgtaaaatatggttgt 1852882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 3603204 - 3603251
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||| ||||||| |||||||| |||||||||||||||||    
T  3603204 tatggtttccgtgccaataccacttttttctttgtaaaatatggttgt 3603251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 8411691 - 8411648
Alignment:
Q  154 tttccgtgtcaatacctcttttttcgttgtaaaatatggttgtt 197  Q
    |||||||| ||||||| |||||||| ||||||||||||||||||    
T  8411691 tttccgtgccaataccacttttttctttgtaaaatatggttgtt 8411648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 20565096 - 20565049
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||| ||||||| |||||||| |||||||||||||||||    
T  20565096 tatggtttccgtggcaataccacttttttctttgtaaaatatggttgt 20565049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 36779247 - 36779200
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    ||||||||||||||||||| | |||||||| |||||||||||| ||||    
T  36779247 tatgatttccgtgtcaatatcacttttttctttgtaaaatatgattgt 36779200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 46082099 - 46082052
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||    
T  46082099 tatggtttccgtgtcaataccacttttttctttgtaaaatatagttgt 46082052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 86
Target Start/End: Original strand, 902638 - 902668
Alignment:
Q  56 gagaaatgatatttgaacatctatttagtga 86  Q
    |||||||||||||||||||||||||||||||    
T  902638 gagaaatgatatttgaacatctatttagtga 902668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 86
Target Start/End: Complemental strand, 1853022 - 1852992
Alignment:
Q  56 gagaaatgatatttgaacatctatttagtga 86  Q
    |||||||||||||||||||||||||||||||    
T  1853022 gagaaatgatatttgaacatctatttagtga 1852992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 26837550 - 26837592
Alignment:
Q  154 tttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| ||||||||||| |||||||| |||||||||||||||||    
T  26837550 tttctgtgtcaataccacttttttctttgtaaaatatggttgt 26837592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 86
Target Start/End: Complemental strand, 33024642 - 33024612
Alignment:
Q  56 gagaaatgatatttgaacatctatttagtga 86  Q
    |||||||||||||||||||||||||||||||    
T  33024642 gagaaatgatatttgaacatctatttagtga 33024612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 38303661 - 38303619
Alignment:
Q  154 tttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||||| ||||||| |||||||| |||||||||||||||||    
T  38303661 tttccgtgccaataccacttttttctttgtaaaatatggttgt 38303619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 3603108 - 3603141
Alignment:
Q  53 aatgagaaatgatatttgaacatctatttagtga 86  Q
    |||||||||||||||||||||||| |||||||||    
T  3603108 aatgagaaatgatatttgaacatccatttagtga 3603141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 51191879 - 51191928
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||| |||||||| |||||||  ||||||| |||||||||||||||||    
T  51191879 gttatgctttccgtgccaataccatttttttctttgtaaaatatggttgt 51191928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 4820346 - 4820411
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgttcaaataacactcctctt 214  Q
    |||| ||| |||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  4820346 tatggttttcgtgccaataccacttttttctttgtaaaatatggttgttcaaataacactcctctt 4820411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 3610939 - 3610894
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggtt 194  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||    
T  3610939 tatggtttccgtgtcaataccacttttttctttgtaaaatatggtt 3610894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 5327569 - 5327522
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||||||||||| |||||||| ||||||| |||||||||    
T  5327569 tatggtttccgtgtcaataccacttttttctttgtaaagtatggttgt 5327522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 86
Target Start/End: Complemental strand, 30036865 - 30036835
Alignment:
Q  56 gagaaatgatatttgaacatctatttagtga 86  Q
    |||||||||||||||||||||||||||||||    
T  30036865 gagaaatgatatttgaacatctatttagtga 30036835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 35213634 - 35213602
Alignment:
Q  54 atgagaaatgatatttgaacatctatttagtga 86  Q
    |||||||||||||||||||||||||||| ||||    
T  35213634 atgagaaatgatatttgaacatctattttgtga 35213602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 21064206 - 21064161
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatatgg 192  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||    
T  21064206 gttatgatttccgtgtcaataccacttttttctttgtaaaatatgg 21064161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 6931037 - 6930989
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgtt 197  Q
    ||||||||||||||||||||| |||||||| | |||||||||| |||||    
T  6931037 tatgatttccgtgtcaataccacttttttcttcgtaaaatatgattgtt 6930989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 33620701 - 33620749
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgtt 197  Q
    |||| |||||||||||||||| |||||||| ||||||| ||||||||||    
T  33620701 tatggtttccgtgtcaataccacttttttctttgtaaagtatggttgtt 33620749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 5042341 - 5042388
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||| ||||||| |||||||| |||||||||||||||||    
T  5042341 tatggtttccgtgccaataccacttttttctttgtaaaatatggttgt 5042388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 35099077 - 35099046
Alignment:
Q  55 tgagaaatgatatttgaacatctatttagtga 86  Q
    ||||||||||||||||||||||||||||||||    
T  35099077 tgagaaatgatatttgaacatctatttagtga 35099046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 81
Target Start/End: Complemental strand, 41175780 - 41175752
Alignment:
Q  53 aatgagaaatgatatttgaacatctattt 81  Q
    |||||||||||||||||||||||||||||    
T  41175780 aatgagaaatgatatttgaacatctattt 41175752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 39671077 - 39671028
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    ||||||||||||||||||||| | |||||||| |||||||||||||||||    
T  39671077 gttatgatttccgtgtcaatatcacttttttctttgtaaaatatggttgt 39671028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 54028033 - 54028082
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  54028033 gttatgatttccgtgtcaataccacttttttctttgtaaagtatggttgt 54028082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 43905064 - 43905113
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||| |||| ||||||||||| |||||||| |||||||||||||||||    
T  43905064 gttatggtttctgtgtcaataccacttttttctttgtaaaatatggttgt 43905113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 46982976 - 46982943
Alignment:
Q  53 aatgagaaatgatatttgaacatctatttagtga 86  Q
    ||||||||||||||||||||||||||||||||||    
T  46982976 aatgagaaatgatatttgaacatctatttagtga 46982943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 10206951 - 10206904
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||| ||||||| |||||||| |||||||||||||||||    
T  10206951 tatggtttccgtgccaataccacttttttctttgtaaaatatggttgt 10206904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 29634050 - 29634003
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||||||||||  |||||| |||||||| |||||||||||||||||    
T  29634050 tatgatttccgtgcaaataccacttttttctttgtaaaatatggttgt 29634003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 37508476 - 37508429
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||| ||||||| |||||||| |||||||||||||||||    
T  37508476 tatggtttccgtgccaataccacttttttctttgtaaaatatggttgt 37508429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 39020137 - 39020090
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||||||||||| |||||||| |||||||||||| ||||    
T  39020137 tatggtttccgtgtcaataccacttttttctttgtaaaatatgattgt 39020090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 54773731 - 54773684
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||||||||||| |||||||| ||||||| |||||||||    
T  54773731 tatggtttccgtgtcaataccacttttttctttgtaaagtatggttgt 54773684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 390907 - 390949
Alignment:
Q  154 tttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||||||||||||| |||||||| |||||||||||| ||||    
T  390907 tttccgtgtcaataccacttttttctttgtaaaatatgattgt 390949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 86
Target Start/End: Original strand, 8821630 - 8821660
Alignment:
Q  56 gagaaatgatatttgaacatctatttagtga 86  Q
    |||||||||||||||||||||||||||||||    
T  8821630 gagaaatgatatttgaacatctatttagtga 8821660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 86
Target Start/End: Complemental strand, 39671169 - 39671139
Alignment:
Q  56 gagaaatgatatttgaacatctatttagtga 86  Q
    |||||||||||||||||||||||||||||||    
T  39671169 gagaaatgatatttgaacatctatttagtga 39671139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 28419194 - 28419145
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||| ||||| || ||||||| |||||||| |||||||||||||||||    
T  28419194 gttatggtttccatgccaataccacttttttctttgtaaaatatggttgt 28419145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 39332078 - 39332125
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    ||||||||||||| ||||||| |||||||| |||||||||||||||||    
T  39332078 tatgatttccgtgccaataccacttttttctttgtaaaatatggttgt 39332125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 13906437 - 13906388
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||| |||||||| ||||||| |||||||| |||||||||||||||||    
T  13906437 gttatggtttccgtgccaataccacttttttctttgtaaaatatggttgt 13906388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 37808744 - 37808695
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||| |||||||| ||||||| |||||||| |||||||||||||||||    
T  37808744 gttatgctttccgtgccaataccacttttttctttgtaaaatatggttgt 37808695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 41402601 - 41402649
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgtt 197  Q
    |||| |||||||| ||||||| |||||||| ||||||||||||||||||    
T  41402601 tatggtttccgtgccaataccacttttttctttgtaaaatatggttgtt 41402649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 13163012 - 13163059
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||| ||||||| |||||||| |||||||||||||||||    
T  13163012 tatggtttccgtgccaataccacttttttctttgtaaaatatggttgt 13163059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 40353357 - 40353411
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgttcaaataa 204  Q
    |||| |||||||| ||||||| |||||||| ||||||||||||||| |||||||||    
T  40353357 tatggtttccgtgccaataccacttttttctttgtaaaatatggtt-ttcaaataa 40353411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 41025761 - 41025792
Alignment:
Q  56 gagaaatgatatttgaacatctatttagtgat 87  Q
    ||||||||||||||||||||||||||||||||    
T  41025761 gagaaatgatatttgaacatctatttagtgat 41025792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 86
Target Start/End: Original strand, 13162919 - 13162949
Alignment:
Q  56 gagaaatgatatttgaacatctatttagtga 86  Q
    |||||||||||||||||||||||||||||||    
T  13162919 gagaaatgatatttgaacatctatttagtga 13162949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 21023097 - 21023048
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||| ||||||||  |||||| |||||||| |||||||||||||||||    
T  21023097 gttatggtttccgtgataataccacttttttctttgtaaaatatggttgt 21023048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 39331982 - 39332015
Alignment:
Q  53 aatgagaaatgatatttgaacatctatttagtga 86  Q
    |||||||||||||||||||||||| |||||||||    
T  39331982 aatgagaaatgatatttgaacatccatttagtga 39332015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 81
Target Start/End: Complemental strand, 22638958 - 22638930
Alignment:
Q  53 aatgagaaatgatatttgaacatctattt 81  Q
    |||||||||||||||||||||||||||||    
T  22638958 aatgagaaatgatatttgaacatctattt 22638930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 46148003 - 46148035
Alignment:
Q  55 tgagaaatgatatttgaacatctatttagtgat 87  Q
    |||||||||||||||||||||||||||| ||||    
T  46148003 tgagaaatgatatttgaacatctatttaatgat 46148035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 12112720 - 12112767
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    ||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  12112720 tatgatttccgtgtcaataccacttttttctttgtaaagtatggttgt 12112767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 25318039 - 25317997
Alignment:
Q  154 tttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||||||||||||| |||||||| |||||||||||||||||    
T  25318039 tttccgtgtcaataccacttttttctttgtaaaatatggttgt 25317997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 14451484 - 14451533
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||| ||| |||||||||||| |||||||| |||||||||||||||||    
T  14451484 gttatggttttcgtgtcaataccacttttttctttgtaaaatatggttgt 14451533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 36111373 - 36111326
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||| ||||||| |||||||| |||||||||||||||||    
T  36111373 tatggtttccgtgccaataccacttttttctttgtaaaatatggttgt 36111326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 41486121 - 41486074
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||| ||||||| |||||||| |||||||||||||||||    
T  41486121 tatggtttccgtgccaataccacttttttctttgtaaaatatggttgt 41486074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 42959365 - 42959412
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||||||||||| |||||||| |||||||||||| ||||    
T  42959365 tatggtttccgtgtcaataccacttttttctttgtaaaatatgattgt 42959412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 50273051 - 50273004
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||| ||||||| |||||||| |||||||||||||||||    
T  50273051 tatggtttccgtgccaataccacttttttctttgtaaaatatggttgt 50273004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 86
Target Start/End: Complemental strand, 624383 - 624353
Alignment:
Q  56 gagaaatgatatttgaacatctatttagtga 86  Q
    |||||||||||||||||||||||||||||||    
T  624383 gagaaatgatatttgaacatctatttagtga 624353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 220
Target Start/End: Complemental strand, 5932068 - 5932038
Alignment:
Q  190 tggttgttcaaataacactcctcttaaggaa 220  Q
    |||||||||||||||||||||||||||||||    
T  5932068 tggttgttcaaataacactcctcttaaggaa 5932038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 86
Target Start/End: Complemental strand, 39312675 - 39312645
Alignment:
Q  56 gagaaatgatatttgaacatctatttagtga 86  Q
    |||||||||||||||||||||||||||||||    
T  39312675 gagaaatgatatttgaacatctatttagtga 39312645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 219
Target Start/End: Complemental strand, 39344891 - 39344861
Alignment:
Q  189 atggttgttcaaataacactcctcttaagga 219  Q
    |||||||||||||||||||||||||||||||    
T  39344891 atggttgttcaaataacactcctcttaagga 39344861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 6141756 - 6141715
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatat 190  Q
    ||||||||||||| ||||||| |||||||| |||||||||||    
T  6141756 tatgatttccgtgccaataccacttttttctttgtaaaatat 6141715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 26206957 - 26206908
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||| |||| |||||| |||| |||||||| |||||||||||||||||    
T  26206957 gttatggtttctgtgtcagtaccacttttttctttgtaaaatatggttgt 26206908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 26207050 - 26207017
Alignment:
Q  54 atgagaaatgatatttgaacatctatttagtgat 87  Q
    ||||||||||||||||||||||| ||||||||||    
T  26207050 atgagaaatgatatttgaacatccatttagtgat 26207017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 33899306 - 33899257
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||| |||||||| |||||||  ||||||| |||||||||||||||||    
T  33899306 gttatggtttccgtgccaataccatttttttctttgtaaaatatggttgt 33899257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 51194360 - 51194409
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||| ||| |||| ||||||| |||||||| |||||||||||||||||    
T  51194360 gttatggttttcgtgccaataccacttttttctttgtaaaatatggttgt 51194409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 5932238 - 5932198
Alignment:
Q  46 tttaaggaatgagaaatgatatttgaacatctatttagtga 86  Q
    ||||||||| |||||||||||||| |||||| |||||||||    
T  5932238 tttaaggaaagagaaatgatatttaaacatccatttagtga 5932198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 14451391 - 14451423
Alignment:
Q  54 atgagaaatgatatttgaacatctatttagtga 86  Q
    ||||||||||||||||||||||| |||||||||    
T  14451391 atgagaaatgatatttgaacatccatttagtga 14451423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 42667217 - 42667249
Alignment:
Q  55 tgagaaatgatatttgaacatctatttagtgat 87  Q
    ||||||||||||||||||||||||||| |||||    
T  42667217 tgagaaatgatatttgaacatctattttgtgat 42667249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 433943 - 433990
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    ||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  433943 tatgatttccgtgtcaataccacttttttctttgtaaagtatggttgt 433990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 670450 - 670403
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||    
T  670450 tatgatttccgtgtcaataccatttttttctttgtaaaatatggttgt 670403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 17779473 - 17779522
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||| |||||||||||||||| |||||||| ||||||| |||||||||    
T  17779473 gttatggtttccgtgtcaataccacttttttctttgtaaagtatggttgt 17779522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 42223932 - 42223889
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatat 190  Q
    |||||| |||||||||||||||| |||||||| |||||||||||    
T  42223932 gttatggtttccgtgtcaataccacttttttctttgtaaaatat 42223889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 86
Target Start/End: Original strand, 18176940 - 18176970
Alignment:
Q  56 gagaaatgatatttgaacatctatttagtga 86  Q
    |||||||||||||||||||||||||||||||    
T  18176940 gagaaatgatatttgaacatctatttagtga 18176970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 37783946 - 37783902
Alignment:
Q  152 gatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||||||||||||||| | |||||| |||||||||||||||||    
T  37783946 gatttccgtgtcaataccacctttttctttgtaaaatatggttgt 37783902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 30135993 - 30135946
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||||||||||| ||| |||| |||||||||||||||||    
T  30135993 tatggtttccgtgtcaataccacttctttctttgtaaaatatggttgt 30135946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 34591357 - 34591404
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||||||||||| |||||||| ||||||| |||||||||    
T  34591357 tatggtttccgtgtcaataccacttttttctttgtaaagtatggttgt 34591404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 45529224 - 45529177
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||| |||||||| ||||||| |||||||| |||||||||||||||||    
T  45529224 tatggtttccgtgccaataccacttttttctttgtaaaatatggttgt 45529177  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 36110229 - 36110278
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||| ||| |||| ||||||| |||||||| |||||||||||||||||    
T  36110229 gttatggttttcgtgccaataccacttttttctttgtaaaatatggttgt 36110278  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 16613632 - 16613664
Alignment:
Q  54 atgagaaatgatatttgaacatctatttagtga 86  Q
    |||||||||||||||||||||||||||| ||||    
T  16613632 atgagaaatgatatttgaacatctattttgtga 16613664  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 38708368 - 38708336
Alignment:
Q  55 tgagaaatgatatttgaacatctatttagtgat 87  Q
    ||||||||||||||||||||||||||| |||||    
T  38708368 tgagaaatgatatttgaacatctatttggtgat 38708336  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 41521061 - 41521109
Alignment:
Q  149 tatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgtt 197  Q
    |||| |||| ||||||||||| || ||||| ||||||||||||||||||    
T  41521061 tatggtttctgtgtcaataccactattttctttgtaaaatatggttgtt 41521109  T

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Target: scaffold0471 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 98 - 147
Alignment:
Q  147 gttatgatttccgtgtcaatacctcttttttcgttgtaaaatatggttgt 196  Q
    |||||| ||| |||| ||||||| |||||||| |||||||||||||||||    
T  98 gttatggttttcgtgccaataccacttttttctttgtaaaatatggttgt 147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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