View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_low_23 (Length: 350)
Name: NF18227_low_23
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 60 - 278
Target Start/End: Original strand, 54771558 - 54771776
Alignment:
| Q |
60 |
gggtctataaagaaggtggcattgagtgcctcgagcaagttcaaaaattcattcaccaagaaggggaggaagcacagcagagttatgtctatctgtattg |
159 |
Q |
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| T |
54771558 |
gggtctataaagaaggtggcattgagtgcctcgagcaagttcaaaaattcattcaccaagaaggggaggaagcacagcagagttatgtctatctgtattg |
54771657 |
T |
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| Q |
160 |
aggatagttttgatgcagaagagttacaggcagttgatgcttttcgacaaacacttatcttggaagagctcttaccctcaaagcatgatgatcctcatat |
259 |
Q |
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| T |
54771658 |
aggatagttttgatgcagaagagttacaggcagttgatgctcttcgacaaacacttatcttggaagagctcttaccctcaaagcatgatgatcctcatat |
54771757 |
T |
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| Q |
260 |
gatgctaaggtaacatttg |
278 |
Q |
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| T |
54771758 |
gatgctaaggtaacatttg |
54771776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 54771824 - 54771865
Alignment:
| Q |
293 |
tgtttggtttgactttttcctttataaattgattcaactttg |
334 |
Q |
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| T |
54771824 |
tgtttggtttgactttttcctttataaattgattcaactttg |
54771865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 54771512 - 54771540
Alignment:
| Q |
14 |
aggtcatgagatggaacattctgaggatg |
42 |
Q |
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| T |
54771512 |
aggtcatgagatggaacattctgaggatg |
54771540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 26638407 - 26638503
Alignment:
| Q |
175 |
cagaagagttacaggcagttgatgcttttcgacaaacacttatcttggaagagctcttaccctcaaagcatgatgatcctcatatgatgctaaggta |
271 |
Q |
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| T |
26638407 |
cagaagagttgcaggcaatcgatgcttttcgtcaagcacttatcctagaagaactattaccctcaaaacatgatgatcatcatatgatgctaaggta |
26638503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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