View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_low_24 (Length: 346)
Name: NF18227_low_24
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_24 |
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| [»] chr4 (7 HSPs) |
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| [»] scaffold0070 (2 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 37598792 - 37599117
Alignment:
| Q |
13 |
aatatgaaggttttgtgattcatggacaagaaaattagataagtctttgtatagtctttaaacaagctcttaagcaaagacatgaaaagtttgacaactt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37598792 |
aatatgaaggttttgtgattcatggacaagaaaattagataagtctttgtatagtctttaaacaagctcttaagcaaagacatgaaaagtttgacaactt |
37598891 |
T |
|
| Q |
113 |
gattatctcatattgatttaagatgaatgaaagtgacaaatacactatcatgtatatctatgtagatgacttactcatttaattcaagttcacaagcaat |
212 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37598892 |
gattatctcatattgatttaaggtgaatgaaagtgacaaatacactatcatgtatatctatgtagatgatttactcatttaattcaagttcacaagcaat |
37598991 |
T |
|
| Q |
213 |
tcaattcaaatcaaatgaaccaagtgaacacaaaaatagctcataaaccttttattttgtctaaaaagcacttaaataaatggataagaacactattgga |
312 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37598992 |
tcaattcaaatcaaatgaaccaa--------aaaaatagctcataaaccttttattttgtccaaaaagcacttaaataaatggataagaacactattgga |
37599083 |
T |
|
| Q |
313 |
aaaactaataatctttcattttactataccctcg |
346 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
37599084 |
aaaactaataatctttcattttactataccctcg |
37599117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 37605017 - 37605123
Alignment:
| Q |
47 |
ttagataagtctttgtatagtctttaaacaagctcttaagcaaagacatgaaaagtttgacaacttgattatctcatattgatttaagatgaatgaaagt |
146 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||||||| |
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| T |
37605017 |
ttagataaatctttgtatagtctttaaacaagctcctaagcaaagacatgaaaaatttgacaatttgattatttcatattgatttaaggtgaatgaaagt |
37605116 |
T |
|
| Q |
147 |
gacaaat |
153 |
Q |
| |
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||||||| |
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| T |
37605117 |
gacaaat |
37605123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 239 - 346
Target Start/End: Original strand, 37605207 - 37605312
Alignment:
| Q |
239 |
aacacaaaaatagctcataaaccttttattttgtctaaaaagcacttaaataaatggataagaacactattggaaaaactaataatctttcattttacta |
338 |
Q |
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|||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37605207 |
aacacaaaaatagctcataaaccttttaattggtctaaaa--cacttaaataaattgataagaacactattggaaaaaccaataatctttcattttacta |
37605304 |
T |
|
| Q |
339 |
taccctcg |
346 |
Q |
| |
|
|||||||| |
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|
| T |
37605305 |
taccctcg |
37605312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 7898121 - 7898150
Alignment:
| Q |
17 |
tgaaggttttgtgattcatggacaagaaaa |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
7898121 |
tgaaggttttgtgattcatggacaagaaaa |
7898150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 16950657 - 16950628
Alignment:
| Q |
17 |
tgaaggttttgtgattcatggacaagaaaa |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
16950657 |
tgaaggttttgtgattcatggacaagaaaa |
16950628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 12877122 - 12877094
Alignment:
| Q |
18 |
gaaggttttgtgattcatggacaagaaaa |
46 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
12877122 |
gaaggttttgtgattcatggacaagaaaa |
12877094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 37605153 - 37605208
Alignment:
| Q |
158 |
tatcatgtatatctatgtagatgacttactc--atttaattcaagttcacaagcaa |
211 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| |||| |||||||||| ||||||| |
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|
| T |
37605153 |
tatcgtgtatatctatgtagatgacttgctcatatttgattcaagttcgcaagcaa |
37605208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 14363403 - 14363301
Alignment:
| Q |
51 |
ataagtctttgtatagtctttaaacaagctcttaagcaaagacatgaaaagtttgacaacttgattatctcatattgatttaagatgaatgaaagtgaca |
150 |
Q |
| |
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|||||||||| ||| ||||| ||||||| || |||||| ||||| |||||||||| ||||||||||| || || |||||| || |||||||||||| |
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| T |
14363403 |
ataagtctttatatggtctt-aaacaagatccaaagcaatgacattaaaagtttgataacttgattatatcgaatgtatttaaagtggatgaaagtgaca |
14363305 |
T |
|
| Q |
151 |
aata |
154 |
Q |
| |
|
|||| |
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| T |
14363304 |
aata |
14363301 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 61348 - 61319
Alignment:
| Q |
17 |
tgaaggttttgtgattcatggacaagaaaa |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
61348 |
tgaaggttttgtgattcatggacaagaaaa |
61319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 65550 - 65521
Alignment:
| Q |
17 |
tgaaggttttgtgattcatggacaagaaaa |
46 |
Q |
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|
|||||||||||||||||||||||||||||| |
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| T |
65550 |
tgaaggttttgtgattcatggacaagaaaa |
65521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 50059 - 50088
Alignment:
| Q |
17 |
tgaaggttttgtgattcatggacaagaaaa |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
50059 |
tgaaggttttgtgattcatggacaagaaaa |
50088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 10327478 - 10327530
Alignment:
| Q |
241 |
cacaaaaatagctcataaaccttttattttgtctaaaaagcacttaaataaat |
293 |
Q |
| |
|
|||||||||||||||||||||| ||| || |||||| || || |||||||||| |
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|
| T |
10327478 |
cacaaaaatagctcataaacctcttaattggtctaagaaccaattaaataaat |
10327530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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