View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_low_26 (Length: 314)
Name: NF18227_low_26
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 783889 - 783608
Alignment:
| Q |
18 |
agaagcatatatctatacaagaaaaaccaatttaaaaagacatttcttgacaaattttaatatctgtaatagtattctaagtgattagttaccaagattt |
117 |
Q |
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| T |
783889 |
agaagcatatatctatacaagaaaaaccaatttaaa--gacatttcttggcaaattttaatatctgtaatagtattctaagtgattagttaccaagattt |
783792 |
T |
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| Q |
118 |
gatcataaagtaacctcaaaaagaacatactcctaatattgagatccaacccctcacccaac--nnnnnnnnnnnnnnncttgatggatgagttggttat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
783791 |
gatcataaagtaacctcaaaaagaacatactcctaatattgagatccaacccctcacccaacaaaaaaagaaaaaaaaacttgatggatgagttggttat |
783692 |
T |
|
| Q |
216 |
tttatttctgaagtatttacttttccnnnnnnnnnnnnnnnnnntttcctcattcttttgaaagagttaactatgcttcctttg |
299 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
783691 |
tttatttctgaagtatttacttttccctctctctatctctctcttttcctcattcttttgaaagagttaactatgcttcctttg |
783608 |
T |
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