View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_low_28 (Length: 306)
Name: NF18227_low_28
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 10102377 - 10102096
Alignment:
| Q |
1 |
taaatactagactaaaatggaacaatgcaaagagcctaagaaaaaa-ggatatctatatgattcagtattattaattaagtgaatgttttaccttatttc |
99 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10102377 |
taaatactagactaaaaaggaacaatgcaaagagcctaagaaaaaaaggatatctatatgattcagtatta---attaagtgaatgttttaccttatttc |
10102281 |
T |
|
| Q |
100 |
tactccttccactaataatggcagtaggaaaataactagcaacttcacgcacagctgcacgcatctgtatttgaaatacattcacaattaagctttagag |
199 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10102280 |
tacttcttccactaataatggcagtaggaaaataactagcaacttcacgcacagctgcacgcatctgtatttgaaat----tcacaattaagctttagag |
10102185 |
T |
|
| Q |
200 |
caaataaattcaacatgagtactcacggtgactctgagggtgtggctgcacaaaactccattaattggtggcaccaatttatttatttt |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10102184 |
caaataaattcaacatgagtactcacggtgactctgagggtgtggctgcacaaaacaccattaattggtggcaccaatttatttatttt |
10102096 |
T |
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