View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18227_low_3 (Length: 725)

Name: NF18227_low_3
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18227_low_3
NF18227_low_3
[»] chr4 (19 HSPs)
chr4 (12-331)||(26163663-26163982)
chr4 (378-708)||(26164031-26164353)
chr4 (4-215)||(26163373-26163584)
chr4 (502-708)||(26182464-26182665)
chr4 (12-215)||(26162817-26163020)
chr4 (198-327)||(26180905-26181034)
chr4 (12-215)||(26163099-26163302)
chr4 (9-215)||(26162955-26163161)
chr4 (50-215)||(26162714-26162879)
chr4 (12-171)||(26163240-26163399)
chr4 (56-215)||(26163566-26163725)
chr4 (228-319)||(26176818-26176909)
chr4 (228-319)||(26193073-26193164)
chr4 (50-129)||(26176679-26176758)
chr4 (46-80)||(26176589-26176623)
chr4 (46-80)||(26192723-26192757)
chr4 (46-80)||(26192810-26192844)
chr4 (116-214)||(26192826-26192924)
chr4 (46-80)||(26192897-26192931)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-132; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 12 - 331
Target Start/End: Original strand, 26163663 - 26163982
Alignment:
Q  12 ttgtacccggtagtgcaatcttggtccttggaaacatgtttaccatattgagttatgtaaggtccattgaagtctggttgtttgacttgatgtctaccat 111  Q
    ||||||||||||||| || || | | |||||   ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26163663 ttgtacccggtagtgtaacctggattcttggcttcatgtttactatattgagttatgtaaggtccattgaaatctggttgtttgacttgatgtctaccat 26163762  T
Q  112 aggtagttatgtaaggttcattgggttcatggctataagtcttgtacccggtagtgtaatattggttcttggtttcgtgtttgaaatattgagtcatgta 211  Q
    ||  |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  26163763 agccagttatgtaaggttcattggattcatggctataaatcttgtacccggtagtgtaatcttggttcttggcttcgtgtttgaaatattgagtcatgta 26163862  T
Q  212 aggtttatcactcgagtccacttgatcctgatctcgcaactccaccttcaagtctctggcattgatgtcttggccaatctacaatgaaaacaatgagaat 311  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  26163863 aggtttatcattcgagtccacttgatcctgatcttgcaactccaccttcaagtctctggcattgatgtcttggccaatctacaatgacgacaatgagaat 26163962  T
Q  312 ataaattgaatgactttttg 331  Q
    ||||||||||||||||||||    
T  26163963 ataaattgaatgactttttg 26163982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 378 - 708
Target Start/End: Original strand, 26164031 - 26164353
Alignment:
Q  378 ttaatgtcccaattgattatccaagttgatatactactatccaagtagattatctaagaagaagaaaattaactgcaagggcctttaaccaggaagaaga 477  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| ||||||| ||||   ||||||||||||||||||||||||||||| ||||||||    
T  26164031 ttaatgtcttaattgattatccaagttgatatactactatccaagttgattatccaaga---agaaaattaactgcaagggcctttaaccaagaagaaga 26164127  T
Q  478 aaaatagaatattgacaaatatacaattgccttgtttggttcattacgggaaaatgaggagagtgaagtaaatattttcacgattgaaatatttattatg 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26164128 aaaatagaatattgacaaatatacaattgccttgtttggttcattgcgggaaaatgaggagagtgaagtaaatattttcacgattgaaatatttattatg 26164227  T
Q  578 acaattaggaaaatgtcattaatttatgtttaaatgtgatattatttttgaaaacatcttgcttccctannnnnnncctccgtatctaataacttaatca 677  Q
    |||||||||||||||||    ||||||||||||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||||||| |    
T  26164228 acaattaggaaaatgtc----atttatgtttaaatgtgatattatttttgaaaaaatcttgcttcccta-ttttttcctccgtatctaataacttaatga 26164322  T
Q  678 aatagctaaaatgtaaaacaatctctcatct 708  Q
    |||||||||||||||||| ||| ||||||||    
T  26164323 aatagctaaaatgtaaaataatttctcatct 26164353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 26163373 - 26163584
Alignment:
Q  4 tataagttttgtacccggtagtgcaatcttggtccttggaaacatgtttaccatattgagttatgtaaggtccattgaagtctggttgtttgacttgatg 103  Q
    ||||||||||||||||||||||| |||||  ||||||||  |||||||||||||||||||||||||||||||||||| | |||||||||||| ||| |||    
T  26163373 tataagttttgtacccggtagtgtaatctgcgtccttggctacatgtttaccatattgagttatgtaaggtccattggaatctggttgtttggcttcatg 26163472  T
Q  104 tctaccataggtagttatgtaaggttcattgggttcatggctataagtcttgtacccggtagtgtaatattggttcttggtttcgtgtttgaaatattga 203  Q
    ||||||||||| ||||||||||||| |||||| ||||||| |||  |||||||||||||||||||||| | ||||| ||| |||||||||||||||||||    
T  26163473 tctaccataggcagttatgtaaggtccattggattcatgggtatgggtcttgtacccggtagtgtaatctgggttcctggcttcgtgtttgaaatattga 26163572  T
Q  204 gtcatgtaaggt 215  Q
    || |||||||||    
T  26163573 gttatgtaaggt 26163584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 502 - 708
Target Start/End: Original strand, 26182464 - 26182665
Alignment:
Q  502 aattgccttgtttggttcattacgggaaaatgaggagagtgaagtaaatattttcacgattgaaatatttattatgacaattaggaaaatgtcattaatt 601  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    |||    
T  26182464 aattgcattatttggttcattacgggaaaatgaggagagtgaagtaaatattttcacgattgaaatatttattatgacaattagtaaaatgtc----att 26182559  T
Q  602 tatgtttaaatgtgatattatttttgaaaacatcttgcttccctannnnnnncctccgtatctaataacttaatcaaatagctaaaatgtaaaacaatct 701  Q
    ||||||||||||||| |||||||||||| | || |||||||||||       |||||||||||||||||||||||||||| ||||||| ||||| ||| |    
T  26182560 tatgtttaaatgtgaaattatttttgaagaaattttgcttcccta-ttttttcctccgtatctaataacttaatcaaataactaaaatttaaaataatat 26182658  T
Q  702 ctcatct 708  Q
    |||||||    
T  26182659 ctcatct 26182665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 26162817 - 26163020
Alignment:
Q  12 ttgtacccggtagtgcaatcttggtccttggaaacatgtttaccatattgagttatgtaaggtccattgaagtctggttgtttgacttgatgtctaccat 111  Q
    ||||||||||||||| ||||| ||| |||||   ||||||||||||||||||||||||||||||||||| | || ||||||||||||| |||||||||||    
T  26162817 ttgtacccggtagtgtaatctgggttcttggcttcatgtttaccatattgagttatgtaaggtccattggaatccggttgtttgacttcatgtctaccat 26162916  T
Q  112 aggtagttatgtaaggttcattgggttcatggctataagtcttgtacccggtagtgtaatattggttcttggtttcgtgtttgaaatattgagtcatgta 211  Q
     || |||||||||||||||||||| ||||||| |||  || |||||||| |||||||||| ||||||||||| ||| |||||   ||||||||| |||||    
T  26162917 gggcagttatgtaaggttcattggattcatgggtatgggttttgtacccagtagtgtaatcttggttcttggcttcatgtttaccatattgagttatgta 26163016  T
Q  212 aggt 215  Q
    ||||    
T  26163017 aggt 26163020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 198 - 327
Target Start/End: Original strand, 26180905 - 26181034
Alignment:
Q  198 tattgagtcatgtaaggtttatcactcgagtccacttgatcctgatctcgcaactccaccttcaagtctctggcattgatgtcttggccaatctacaatg 297  Q
    ||||| || ||||||||||||||| |||||||||||||||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  26180905 tattgtgtaatgtaaggtttatcattcgagtccacttgatcatgatcttgcagctctaccttcaagtctctggcattgatgtcttggccaatctacaatg 26181004  T
Q  298 aaaacaatgagaatataaattgaatgactt 327  Q
    | ||||| |||||||||||||||| |||||    
T  26181005 acaacaacgagaatataaattgaaagactt 26181034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 26163099 - 26163302
Alignment:
Q  12 ttgtacccggtagtgcaatcttggtccttggaaacatgtttaccatattgagttatgtaaggtccattgaagtctggttgtttgacttgatgtctaccat 111  Q
    ||||||| ||||||| ||||| ||| |||||   ||||| |||||||||||||||||||||||| |||| | |  ||||||||| |||||||||||||||    
T  26163099 ttgtaccgggtagtgtaatctgggttcttggcttcatgtgtaccatattgagttatgtaaggtctattggaattcggttgtttggcttgatgtctaccat 26163198  T
Q  112 aggtagttatgtaaggttcattgggttcatggctataagtcttgtacccggtagtgtaatattggttcttggtttcgtgtttgaaatattgagtcatgta 211  Q
    ||| |||||||||| ||||||| | ||||||  ||| ||| ||||||||||||||||||| | ||||||||  ||| |||||   ||||||||| |||||    
T  26163199 agggagttatgtaacgttcattagattcatgagtatgagtattgtacccggtagtgtaatctgggttcttgtcttcatgtttaccatattgagttatgta 26163298  T
Q  212 aggt 215  Q
    ||||    
T  26163299 aggt 26163302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 26162955 - 26163161
Alignment:
Q  9 gttttgtacccggtagtgcaatcttggtccttggaaacatgtttaccatattgagttatgtaaggtccattgaagtctggttgtttgacttgatgtctac 108  Q
    ||||||||||| |||||| ||||||||| |||||   ||||||||||||||||||||||||||||||||||| | |||| ||||||| | | |||  |||    
T  26162955 gttttgtacccagtagtgtaatcttggttcttggcttcatgtttaccatattgagttatgtaaggtccattggattctgattgtttggcgtcatgattac 26163054  T
Q  109 cataggtagttatgtaaggttcattgggttcatggctataagtcttgtacccggtagtgtaatattggttcttggtttcgtgtttgaaatattgagtcat 208  Q
    |||||| | ||||||||||| | ||||  |||||| |||  |||||||||| ||||||||||| | ||||||||| ||| ||| |   ||||||||| ||    
T  26163055 cataggcacttatgtaaggtcctttggcctcatgggtatgggtcttgtaccgggtagtgtaatctgggttcttggcttcatgtgtaccatattgagttat 26163154  T
Q  209 gtaaggt 215  Q
    |||||||    
T  26163155 gtaaggt 26163161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 50 - 215
Target Start/End: Original strand, 26162714 - 26162879
Alignment:
Q  50 tttaccatattgagttatgtaaggtccattgaagtctggttgtttgacttgatgtctaccataggtagttatgtaaggttcattgggttcatggctataa 149  Q
    ||||||||||||||| |||||||||||||||   ||   ||||||| ||| |||| ||||||||| |||||||||||||||||||| ||||||| |||      
T  26162714 tttaccatattgagtaatgtaaggtccattggtttccaattgtttggcttcatgtttaccataggcagttatgtaaggttcattggattcatgggtatgg 26162813  T
Q  150 gtcttgtacccggtagtgtaatattggttcttggtttcgtgtttgaaatattgagtcatgtaaggt 215  Q
    |||||||||||||||||||||| | ||||||||| ||| |||||   ||||||||| |||||||||    
T  26162814 gtcttgtacccggtagtgtaatctgggttcttggcttcatgtttaccatattgagttatgtaaggt 26162879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 26163240 - 26163399
Alignment:
Q  12 ttgtacccggtagtgcaatcttggtccttggaaacatgtttaccatattgagttatgtaaggtccattgaagtctggttgtttgacttgatgtctaccat 111  Q
    ||||||||||||||| ||||| ||| ||||    ||||||||||||||||||||||||||||||||||| | ||| ||||||||  || |||||||   |    
T  26163240 ttgtacccggtagtgtaatctgggttcttgtcttcatgtttaccatattgagttatgtaaggtccattggaatctagttgtttggtttcatgtctattgt 26163339  T
Q  112 aggtagttatgtaaggttcattgggttcatggctataagtcttgtacccggtagtgtaat 171  Q
    ||| ||||||||||||| |||||| ||||||  ||||||| |||||||||||||||||||    
T  26163340 aggaagttatgtaaggtccattggattcatgagtataagttttgtacccggtagtgtaat 26163399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 56 - 215
Target Start/End: Original strand, 26163566 - 26163725
Alignment:
Q  56 atattgagttatgtaaggtccattgaagtctggttgtttgacttgatgtctaccataggtagttatgtaaggttcattgggttcatggctataagtcttg 155  Q
    ||||||||||||||||||| ||||| | || ||||||||   || ||||||||||||||| ||||||||||||||||||| ||||||| |||  ||||||    
T  26163566 atattgagttatgtaaggtgcattggaatccggttgtttagattcatgtctaccataggttgttatgtaaggttcattggattcatgggtatgggtcttg 26163665  T
Q  156 tacccggtagtgtaatattggttcttggtttcgtgtttgaaatattgagtcatgtaaggt 215  Q
    |||||||||||||||  | | ||||||| ||| |||||   ||||||||| |||||||||    
T  26163666 tacccggtagtgtaacctggattcttggcttcatgtttactatattgagttatgtaaggt 26163725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 26176818 - 26176909
Alignment:
Q  228 tccacttgatcctgatctcgcaactccaccttcaagtctctggcattgatgtcttggccaatctacaatgaaaacaatgagaatataaattg 319  Q
    ||||||||||  |||||||||| ||| || ||||||||||| |||||||||  || |||||||||||||||    |||||||||||||||||    
T  26176818 tccacttgattttgatctcgcagctctactttcaagtctctcgcattgatgcttttgccaatctacaatgatgttaatgagaatataaattg 26176909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 26193073 - 26193164
Alignment:
Q  228 tccacttgatcctgatctcgcaactccaccttcaagtctctggcattgatgtcttggccaatctacaatgaaaacaatgagaatataaattg 319  Q
    ||||||||||  |||||||||| ||| || ||||||||||| |||||||||  || |||||||||||||||    |||||||||||||||||    
T  26193073 tccacttgattttgatctcgcagctctactttcaagtctctcgcattgatgcttttgccaatctacaatgatgttaatgagaatataaattg 26193164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 26176679 - 26176758
Alignment:
Q  50 tttaccatattgagttatgtaaggtccattgaagtctggttgtttgacttgatgtctaccataggtagttatgtaaggtt 129  Q
    ||||||||||  ||||||||||||| ||||  | |||||||||||| ||| |||| |||||||   ||||||||||||||    
T  26176679 tttaccatatccagttatgtaaggttcatttgattctggttgtttggcttcatgtttaccatatccagttatgtaaggtt 26176758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 26176589 - 26176623
Alignment:
Q  46 catgtttaccatattgagttatgtaaggtccattg 80  Q
    |||||||||||||||||||||||||||| ||||||    
T  26176589 catgtttaccatattgagttatgtaaggaccattg 26176623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 26192723 - 26192757
Alignment:
Q  46 catgtttaccatattgagttatgtaaggtccattg 80  Q
    |||||||||||||||||||||||||||| ||||||    
T  26192723 catgtttaccatattgagttatgtaaggaccattg 26192757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 26192810 - 26192844
Alignment:
Q  46 catgtttaccatattgagttatgtaaggtccattg 80  Q
    |||||||||||||||||||||||||||| ||||||    
T  26192810 catgtttaccatattgagttatgtaaggaccattg 26192844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 26192826 - 26192924
Alignment:
Q  116 agttatgtaaggttcattgggttcatggctataagtcttgtacccggtagtgtaatattggttcttggtttcgtgtttgaaatattgagtcatgtaagg 214  Q
    ||||||||||||  |||||| ||||||| |||  ||| | ||||||||| |||||| ||| | ||||||||| |||||   ||||||||| ||||||||    
T  26192826 agttatgtaaggaccattggattcatggttatgggtcctatacccggtaatgtaattttgttgcttggtttcatgtttaccatattgagttatgtaagg 26192924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 26192897 - 26192931
Alignment:
Q  46 catgtttaccatattgagttatgtaaggtccattg 80  Q
    |||||||||||||||||||||||||||| ||||||    
T  26192897 catgtttaccatattgagttatgtaaggaccattg 26192931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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