View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18227_low_35 (Length: 274)

Name: NF18227_low_35
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18227_low_35
NF18227_low_35
[»] chr3 (5 HSPs)
chr3 (28-267)||(38285389-38285628)
chr3 (36-66)||(8126201-8126231)
chr3 (30-83)||(20625272-20625325)
chr3 (30-62)||(14626703-14626735)
chr3 (36-68)||(21659207-21659239)
[»] chr4 (16 HSPs)
chr4 (30-103)||(37381088-37381158)
chr4 (68-119)||(53019132-53019183)
chr4 (30-103)||(38938074-38938146)
chr4 (36-68)||(16450228-16450260)
chr4 (68-119)||(30051339-30051390)
chr4 (68-119)||(55131629-55131680)
chr4 (30-68)||(33084786-33084824)
chr4 (30-68)||(42013179-42013217)
chr4 (29-63)||(50459382-50459416)
chr4 (35-68)||(49573917-49573950)
chr4 (35-67)||(11796623-11796655)
chr4 (30-62)||(17659540-17659572)
chr4 (30-66)||(24275288-24275324)
chr4 (36-68)||(30162680-30162712)
chr4 (36-68)||(53403030-53403062)
chr4 (36-68)||(55501241-55501273)
[»] chr7 (12 HSPs)
chr7 (30-120)||(33784093-33784183)
chr7 (30-68)||(46578298-46578336)
chr7 (30-66)||(5691547-5691583)
chr7 (30-68)||(24166296-24166334)
chr7 (30-68)||(39960307-39960345)
chr7 (66-119)||(35481878-35481931)
chr7 (30-66)||(3498327-3498363)
chr7 (71-103)||(9503992-9504024)
chr7 (40-68)||(24733184-24733212)
chr7 (36-68)||(27234927-27234959)
chr7 (30-66)||(27942396-27942432)
chr7 (30-66)||(46221111-46221147)
[»] chr2 (9 HSPs)
chr2 (30-100)||(31211750-31211820)
chr2 (30-68)||(4637076-4637114)
chr2 (30-67)||(19822411-19822448)
chr2 (30-67)||(19842632-19842669)
chr2 (36-68)||(10099621-10099653)
chr2 (30-66)||(27743687-27743723)
chr2 (30-66)||(29712520-29712556)
chr2 (30-66)||(30905195-30905231)
chr2 (30-66)||(38179027-38179063)
[»] chr8 (4 HSPs)
chr8 (36-93)||(10150908-10150965)
chr8 (31-68)||(13832077-13832114)
chr8 (35-68)||(44838843-44838876)
chr8 (30-66)||(42631812-42631848)
[»] chr1 (9 HSPs)
chr1 (70-119)||(47293368-47293417)
chr1 (78-119)||(47991880-47991921)
chr1 (30-66)||(15055026-15055062)
chr1 (39-94)||(33324088-33324143)
chr1 (30-84)||(34332981-34333035)
chr1 (30-67)||(36164027-36164064)
chr1 (36-68)||(21852476-21852508)
chr1 (36-68)||(24478704-24478736)
chr1 (36-68)||(31481904-31481936)
[»] chr5 (7 HSPs)
chr5 (30-68)||(30489165-30489203)
chr5 (68-126)||(22584325-22584383)
chr5 (70-103)||(25596509-25596542)
chr5 (36-68)||(15966682-15966714)
chr5 (36-68)||(36329119-36329151)
chr5 (30-66)||(36346866-36346902)
chr5 (30-66)||(40208548-40208584)
[»] scaffold0531 (1 HSPs)
scaffold0531 (68-119)||(7002-7053)
[»] chr6 (1 HSPs)
chr6 (30-68)||(28737860-28737898)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 28 - 267
Target Start/End: Original strand, 38285389 - 38285628
Alignment:
Q  28 aatttaaattcattcaattaatgatatatgtggtttatatttgaatgaatctaaaaagttaaatttgcctataatttataacagatggagtagttacaag 127  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  38285389 aatttaaattcattcaattaataatatatgtggtttatatttgaatgaat-taaaatgttaaatttgcccataatttataacagatggagtagttacaag 38285487  T
Q  128 ttggttgctaaatttagtnnnnnnnnn-gggttggtacattatgtcgtaagtttagttatgaccactaaacttataaagttcatttttcatttagtttat 226  Q
    ||||||||||||||||||          |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  38285488 ttggttgctaaatttagtaaaaaaaaatgggttggtacattatgtcgtaagtttagttatgatcactaaacttataaagttcatttttcatttaatttat 38285587  T
Q  227 ttttctataattagactctactatgcttctcaacattatca 267  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  38285588 ttttctataattagactctactatgcttctcaacatgatca 38285628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 8126231 - 8126201
Alignment:
Q  36 ttcattcaattaatgatatatgtggtttata 66  Q
    |||||||||||||||||||||||||||||||    
T  8126231 ttcattcaattaatgatatatgtggtttata 8126201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 20625272 - 20625325
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttatatttgaatgaatctaaaa 83  Q
    |||||||||||| | | |||||| ||||||||||||| ||||||||| ||||||    
T  20625272 tttaaattcatttattaaatgatgtatgtggtttataattgaatgaacctaaaa 20625325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 14626735 - 14626703
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtt 62  Q
    ||||||||||||||||||||||| |||||||||    
T  14626735 tttaaattcattcaattaatgatgtatgtggtt 14626703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 21659239 - 21659207
Alignment:
Q  36 ttcattcaattaatgatatatgtggtttatatt 68  Q
    |||||||||||||||||||||||||| ||||||    
T  21659239 ttcattcaattaatgatatatgtggtctatatt 21659207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 37381158 - 37381088
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttatatttgaatgaatctaaaaagttaaatttgcctataatt 103  Q
    |||| |||| |||||||||||||||||||||||||||||   ||||||||||||||| |||||||| |||||||    
T  37381158 tttagattcgttcaattaatgatatatgtggtttatatt---atgaatctaaaaagtaaaatttgcttataatt 37381088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 53019183 - 53019132
Alignment:
Q  68 ttgaatgaatctaaaaagttaaatttgcctataatttataacagatggagta 119  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||||||||||    
T  53019183 ttgagtgaatctaaaaagttaaatttgcttataattaataacagatggagta 53019132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 38938074 - 38938146
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttatatttgaatgaatctaaaaagttaaatttgcctataatt 103  Q
    |||| ||||||||||||||| || ||||||||| ||| |||||||||||| |||||| |||||||| |||||||    
T  38938074 tttagattcattcaattaataatgtatgtggttcataattgaatgaatct-aaaagtcaaatttgcttataatt 38938146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 16450260 - 16450228
Alignment:
Q  36 ttcattcaattaatgatatatgtggtttatatt 68  Q
    |||||||||||||||||||||||||||||||||    
T  16450260 ttcattcaattaatgatatatgtggtttatatt 16450228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 30051390 - 30051339
Alignment:
Q  68 ttgaatgaatctaaaaagttaaatttgcctataatttataacagatggagta 119  Q
    ||||||||| |||||||||||||||||| |||| |||| ||| |||||||||    
T  30051390 ttgaatgaacctaaaaagttaaatttgcttatattttaaaacggatggagta 30051339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 55131629 - 55131680
Alignment:
Q  68 ttgaatgaatctaaaaagttaaatttgcctataatttataacagatggagta 119  Q
    ||||||||| |||||||||||||||||| ||||||| | ||| |||||||||    
T  55131629 ttgaatgaacctaaaaagttaaatttgcttataattaacaacggatggagta 55131680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 33084824 - 33084786
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttatatt 68  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  33084824 tttaaattcattcaattaatgatatatctggttcatatt 33084786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 42013179 - 42013217
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttatatt 68  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  42013179 tttaaattcattcaattaatgatgtatgtggtctatatt 42013217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 50459382 - 50459416
Alignment:
Q  29 atttaaattcattcaattaatgatatatgtggttt 63  Q
    ||||||||||||| |||||||||||||||||||||    
T  50459382 atttaaattcatttaattaatgatatatgtggttt 50459416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 49573917 - 49573950
Alignment:
Q  35 attcattcaattaatgatatatgtggtttatatt 68  Q
    |||||||||||||||||| |||||||||||||||    
T  49573917 attcattcaattaatgatgtatgtggtttatatt 49573950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 11796623 - 11796655
Alignment:
Q  35 attcattcaattaatgatatatgtggtttatat 67  Q
    ||||||||||| |||||||||||||||||||||    
T  11796623 attcattcaatgaatgatatatgtggtttatat 11796655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 17659572 - 17659540
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtt 62  Q
    |||| ||||||||||||||||||||||||||||    
T  17659572 tttagattcattcaattaatgatatatgtggtt 17659540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 24275324 - 24275288
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttata 66  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  24275324 tttaaattcattcaattaatgatgtatgtggtctata 24275288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 30162712 - 30162680
Alignment:
Q  36 ttcattcaattaatgatatatgtggtttatatt 68  Q
    ||||||||||||||||||||||||||| |||||    
T  30162712 ttcattcaattaatgatatatgtggttcatatt 30162680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 53403030 - 53403062
Alignment:
Q  36 ttcattcaattaatgatatatgtggtttatatt 68  Q
    ||||||||||||||||| |||||||||||||||    
T  53403030 ttcattcaattaatgatgtatgtggtttatatt 53403062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 55501241 - 55501273
Alignment:
Q  36 ttcattcaattaatgatatatgtggtttatatt 68  Q
    ||||||||||||||||| |||||||||||||||    
T  55501241 ttcattcaattaatgatgtatgtggtttatatt 55501273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 33784093 - 33784183
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttatatttgaatgaatctaaaaagttaaatttgcctataatttataacagatggagtag 120  Q
    ||||||||||||||||||||||| ||||||||  ||| ||||| |||  |||||||| |||||||| |||| |||  ||||||||||||||    
T  33784093 tttaaattcattcaattaatgatgtatgtggtccataattgaacgaacttaaaaagtaaaatttgcttatattttgaaacagatggagtag 33784183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 46578298 - 46578336
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttatatt 68  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  46578298 tttaaattcattcaattaatgatgtatgtggtttatatt 46578336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 5691583 - 5691547
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttata 66  Q
    ||||||||||||||||||||||| |||||||||||||    
T  5691583 tttaaattcattcaattaatgatgtatgtggtttata 5691547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 24166296 - 24166334
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttatatt 68  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  24166296 tttaagttcattcaattaatgatatatgtggttcatatt 24166334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 39960345 - 39960307
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttatatt 68  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  39960345 tttaaattcattcaattaatgatatatgtagtttttatt 39960307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 35481878 - 35481931
Alignment:
Q  66 atttgaatgaatctaaaaagttaaatttgcctataatttataacagatggagta 119  Q
    |||| |||||||||||||| | |||||||| |||||||||| | ||||||||||    
T  35481878 atttaaatgaatctaaaaaatcaaatttgcttataatttatgatagatggagta 35481931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 3498327 - 3498363
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttata 66  Q
    |||| |||||||||||||||||| |||||||||||||    
T  3498327 tttagattcattcaattaatgatgtatgtggtttata 3498363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 9503992 - 9504024
Alignment:
Q  71 aatgaatctaaaaagttaaatttgcctataatt 103  Q
    ||||||||||||||||||||||||| |||||||    
T  9503992 aatgaatctaaaaagttaaatttgcttataatt 9504024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 24733212 - 24733184
Alignment:
Q  40 ttcaattaatgatatatgtggtttatatt 68  Q
    |||||||||||||||||||||||||||||    
T  24733212 ttcaattaatgatatatgtggtttatatt 24733184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 27234959 - 27234927
Alignment:
Q  36 ttcattcaattaatgatatatgtggtttatatt 68  Q
    ||||||||||||||||||||||||||| |||||    
T  27234959 ttcattcaattaatgatatatgtggttcatatt 27234927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 27942432 - 27942396
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttata 66  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  27942432 tttaagttcattcaattaatgatgtatgtggtttata 27942396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 46221111 - 46221147
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttata 66  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  46221111 tttaagttcattcaattaatgatgtatgtggtttata 46221147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 31211820 - 31211750
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttatatttgaatgaatctaaaaagttaaatttgcctata 100  Q
    |||| |||||||| ||||||||| ||||||||| ||| ||||||||||||||||||| |||||||| ||||    
T  31211820 tttagattcattccattaatgatgtatgtggttcataattgaatgaatctaaaaagtaaaatttgcttata 31211750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 4637114 - 4637076
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttatatt 68  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  4637114 tttagattcattcaattaatgatgtatgtggtttatatt 4637076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 19822411 - 19822448
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttatat 67  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  19822411 tttaagttcattcaatcaatgatatatgtggtttatat 19822448  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 19842632 - 19842669
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttatat 67  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  19842632 tttaagttcattcaatcaatgatatatgtggtttatat 19842669  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 10099653 - 10099621
Alignment:
Q  36 ttcattcaattaatgatatatgtggtttatatt 68  Q
    |||||||||||||||||||||||||| ||||||    
T  10099653 ttcattcaattaatgatatatgtggtctatatt 10099621  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 27743723 - 27743687
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttata 66  Q
    |||| |||||||||||||||||| |||||||||||||    
T  27743723 tttagattcattcaattaatgatgtatgtggtttata 27743687  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 29712520 - 29712556
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttata 66  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  29712520 tttaagttcattcaattaatgatgtatgtggtttata 29712556  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 30905231 - 30905195
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttata 66  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  30905231 tttaagttcattcaattaatgatgtatgtggtttata 30905195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 38179027 - 38179063
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttata 66  Q
    |||||||||||||| | ||||||||||||||||||||    
T  38179027 tttaaattcattcactaaatgatatatgtggtttata 38179063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 10150908 - 10150965
Alignment:
Q  36 ttcattcaattaatgatatatgtggtttatatttgaatgaatctaaaaagttaaattt 93  Q
    ||||||||||||||||| ||||||||| ||| ||||||||| ||||||||| ||||||    
T  10150908 ttcattcaattaatgatgtatgtggttcataattgaatgaacctaaaaagtcaaattt 10150965  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 13832114 - 13832077
Alignment:
Q  31 ttaaattcattcaattaatgatatatgtggtttatatt 68  Q
    |||||||||||||||||||||||||||||||| |||||    
T  13832114 ttaaattcattcaattaatgatatatgtggttcatatt 13832077  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 44838876 - 44838843
Alignment:
Q  35 attcattcaattaatgatatatgtggtttatatt 68  Q
    |||||||||||||||||||||||||||| |||||    
T  44838876 attcattcaattaatgatatatgtggttcatatt 44838843  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 42631812 - 42631848
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttata 66  Q
    |||| |||||||||||||||||| |||||||||||||    
T  42631812 tttagattcattcaattaatgatgtatgtggtttata 42631848  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 47293368 - 47293417
Alignment:
Q  70 gaatgaatctaaaaagttaaatttgcctataatttataacagatggagta 119  Q
    |||||||||||||||||||||||||| ||||||| | |||||||||||||    
T  47293368 gaatgaatctaaaaagttaaatttgcttataattgacaacagatggagta 47293417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 47991880 - 47991921
Alignment:
Q  78 ctaaaaagttaaatttgcctataatttataacagatggagta 119  Q
    |||||||||||||||||| ||||||| |||||||||||||||    
T  47991880 ctaaaaagttaaatttgcttataattcataacagatggagta 47991921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 15055062 - 15055026
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttata 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  15055062 tttagattcattcaattaatgatatatgtggtttata 15055026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 33324143 - 33324088
Alignment:
Q  39 attcaattaatgatatatgtggtttatatttgaatgaatctaaaaagttaaatttg 94  Q
    ||||||||||| || ||||||||| ||| ||||||||| ||||||||| |||||||    
T  33324143 attcaattaataatgtatgtggttcataattgaatgaacctaaaaagtgaaatttg 33324088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 34332981 - 34333035
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttatatttgaatgaatctaaaaa 84  Q
    ||||| ||||||||||||||||| ||||||||| |||||| ||| || |||||||    
T  34332981 tttaagttcattcaattaatgatgtatgtggttcatatttaaattaacctaaaaa 34333035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 36164064 - 36164027
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttatat 67  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  36164064 tttaaattcattcaataaatgatatatgtggtatatat 36164027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 21852476 - 21852508
Alignment:
Q  36 ttcattcaattaatgatatatgtggtttatatt 68  Q
    ||||||||||||||||||||||||||| |||||    
T  21852476 ttcattcaattaatgatatatgtggttcatatt 21852508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 24478704 - 24478736
Alignment:
Q  36 ttcattcaattaatgatatatgtggtttatatt 68  Q
    |||||||||||||||||||||||||| ||||||    
T  24478704 ttcattcaattaatgatatatgtggtctatatt 24478736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 31481904 - 31481936
Alignment:
Q  36 ttcattcaattaatgatatatgtggtttatatt 68  Q
    |||||||| ||||||||||||||||||||||||    
T  31481904 ttcattcatttaatgatatatgtggtttatatt 31481936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 30489203 - 30489165
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttatatt 68  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  30489203 tttaaattcattcaattaatgatatatgtggtctatatt 30489165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 22584325 - 22584383
Alignment:
Q  68 ttgaatgaatctaaaaagttaaatttgcctataatttataacagatggagtagttacaa 126  Q
    ||||||||| ||||||||| |||||||| |||| || | ||||||||||||| ||||||    
T  22584325 ttgaatgaacctaaaaagtaaaatttgcttatatttaaaaacagatggagtatttacaa 22584383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 25596509 - 25596542
Alignment:
Q  70 gaatgaatctaaaaagttaaatttgcctataatt 103  Q
    |||||||||||||||||||||||||| |||||||    
T  25596509 gaatgaatctaaaaagttaaatttgcttataatt 25596542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 15966682 - 15966714
Alignment:
Q  36 ttcattcaattaatgatatatgtggtttatatt 68  Q
    ||||||||||||||||| |||||||||||||||    
T  15966682 ttcattcaattaatgatgtatgtggtttatatt 15966714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 36329119 - 36329151
Alignment:
Q  36 ttcattcaattaatgatatatgtggtttatatt 68  Q
    ||||||||||||||||||||||||||| |||||    
T  36329119 ttcattcaattaatgatatatgtggttcatatt 36329151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 36346902 - 36346866
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttata 66  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  36346902 tttaagttcattcaattaatgatgtatgtggtttata 36346866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 40208584 - 40208548
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttata 66  Q
    ||||| || ||||||||||||||||||||||||||||    
T  40208584 tttaagtttattcaattaatgatatatgtggtttata 40208548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 7053 - 7002
Alignment:
Q  68 ttgaatgaatctaaaaagttaaatttgcctataatttataacagatggagta 119  Q
    ||||||||||||||||||| |||||||| |||||||  |||| |||||||||    
T  7053 ttgaatgaatctaaaaagtcaaatttgcttataattagtaacggatggagta 7002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 28737860 - 28737898
Alignment:
Q  30 tttaaattcattcaattaatgatatatgtggtttatatt 68  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  28737860 tttaaattcattcaattaatgatgtatgtggttcatatt 28737898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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