View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_low_36 (Length: 270)
Name: NF18227_low_36
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 47 - 253
Target Start/End: Original strand, 38285729 - 38285934
Alignment:
| Q |
47 |
agattgactctaatattaataatatttatttccgttacgcgtgctattataacgtgacacctatattagccctttttatagaaagtgctattatatggta |
146 |
Q |
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| T |
38285729 |
agattgactataatattaataatagc-atttccgttacccgtgctattataacgtgacatctatattag-tctttttatagaaagtgctattatatggta |
38285826 |
T |
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| Q |
147 |
ttnnnnnnnnnnnnnnnnnnnnngaagagtgtgaaatgataggagtgtgatagcgttttct---agtgaaggccaatttgttttcttctttgatttttgt |
243 |
Q |
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|| || ||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38285827 |
ttaaaaaaaattataaaaaaagagaggagtgtg--atgataggagtgtgatagtgttttctagcagtgaaggccaatttgttttcttctttgatttttgt |
38285924 |
T |
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| Q |
244 |
tgttgtgtgt |
253 |
Q |
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|||||||||| |
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| T |
38285925 |
tgttgtgtgt |
38285934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 4840965 - 4840866
Alignment:
| Q |
47 |
agattgactctaatattaataatatttatttccgttacgcgtgctattataacgtgacacctatattagccctttttatagaaagtgctattatatggta |
146 |
Q |
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|||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4840965 |
agattgactctaatattaataatagc-acttccgttacgcatgctattataacgtgacacctatattagccc-ttttatagaaagtgctattatatggta |
4840868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 38285648 - 38285683
Alignment:
| Q |
16 |
ttatttggtaaagtacactacgccaattttgagatt |
51 |
Q |
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| T |
38285648 |
ttatttggtaaagtatactacgccaattttgagatt |
38285683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 28156958 - 28157057
Alignment:
| Q |
47 |
agattgactctaatattaataatatttatttccgttacgcgtgctattataacgtgacacctatattagccctttttatagaaagtgctattatatggta |
146 |
Q |
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||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28156958 |
agattgactataatattaataatagc-atttccgttacgcatgctattataacgtgacacctatattagccc-ttttatagaaagtgctattatatggta |
28157055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 28159595 - 28159632
Alignment:
| Q |
216 |
ccaatttgttttcttctttgatttttgttgttgtgtgt |
253 |
Q |
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| T |
28159595 |
ccaatttgttttcttctttgatttttgttgttgtgtgt |
28159632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 13070200 - 13070101
Alignment:
| Q |
47 |
agattgactctaatattaataatatttatttccgttacgcgtgctattataacgtgacacctatattagccctttttatagaaagtgctattatatggta |
146 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13070200 |
agattgactctaatattaataatagc-atttccgttacgcaagctattataacgtgacacctatattagccc-ttttatagaaagtgctattatatggta |
13070103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 14361357 - 14361258
Alignment:
| Q |
47 |
agattgactctaatattaataatatttatttccgttacgcgtgctattataacgtgacacctatattagccctttttatagaaagtgctattatatggta |
146 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||| |
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| T |
14361357 |
agattgactctaatattaataatagc-atttccgttacgcatgctattataacgtgacacctatattagccc-ttttatacaaagtgctgttatatggta |
14361260 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 14358794 - 14358757
Alignment:
| Q |
216 |
ccaatttgttttcttctttgatttttgttgttgtgtgt |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
14358794 |
ccaatttgttttcttctttgatttttgttgttgtgtgt |
14358757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 213
Target Start/End: Complemental strand, 14361227 - 14361196
Alignment:
| Q |
182 |
atgataggagtgtgatagcgttttctagtgaa |
213 |
Q |
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| T |
14361227 |
atgataggagtgtgatagcgttttctagtgaa |
14361196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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