View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_low_38 (Length: 261)
Name: NF18227_low_38
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 9938597 - 9938364
Alignment:
| Q |
17 |
tttgaagctggaaaccttttgcaaattgagggagaaactaggcatctgtgaaatgtcttaattctttgtgatatatgtttgtaaactaaatttgtttgtc |
116 |
Q |
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| T |
9938597 |
tttgaagctggaaaccttttgcaaattgagggagaaactaggcatctgtgaaatgtcttaattctttgtgatatatgtctgtaaactaaatttgtttgtc |
9938498 |
T |
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| Q |
117 |
ataaggttcagtttaggagagtgattgttaggatatgcttgttacaagttagttagaagttagttgtggaagttacttagctctcaagtaactcagtttg |
216 |
Q |
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| T |
9938497 |
ataaggttcagtttaggagagtaattgttaggatatgcttgttacaagttagttagaagttagttgtggaagttacttagctctcaagtaactcagtttg |
9938398 |
T |
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| Q |
217 |
ttgtgtatctcagtttgctatatataggacctttg |
251 |
Q |
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| T |
9938397 |
ttgtgta-ctcagtttgctatatataggagctttg |
9938364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 30288244 - 30288315
Alignment:
| Q |
173 |
aagttagttgtggaagttacttagctctcaagtaactcag-tttgttgtgtatctcagtttgctatatatag |
243 |
Q |
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||||||||| | |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
30288244 |
aagttagttttagaagttacttagcttgcaagtaactcagttttgtagtgtatctcagtttgctatatatag |
30288315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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