View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_low_39 (Length: 254)
Name: NF18227_low_39
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_39 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 76 - 254
Target Start/End: Complemental strand, 3652994 - 3652816
Alignment:
| Q |
76 |
tactgtttataaaattttggatgcttttcttctcattaaggagttctgtcctatgcaaatggctctaattctaatcattttaaaatgctttattacacgt |
175 |
Q |
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| T |
3652994 |
tactgtttataaaattttggatgcttttcttctcattaagaagttctgtcctatgcaagtggctctaattctaatcattttaaaatgctttattacacgt |
3652895 |
T |
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| Q |
176 |
tccaggggttaatagatcaagttatagggaaaggaagctccacttaatctgtttcaatctcttttctgcaaaaatgtgt |
254 |
Q |
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| T |
3652894 |
tccaggggttaatggatcaagttatagggaaagcaagctccacttaatctgtttcaatctcttttctgcaaaaatgtgt |
3652816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 3659225 - 3658986
Alignment:
| Q |
12 |
atgaactagaatatacttgcatgattcagaagcaatttaaaattgacaacatgaaaacttggcatactgtttataaaattttggatgcttttcttctcat |
111 |
Q |
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| T |
3659225 |
atgaactagaatatacttgcatgattcagaagcaattcaaaattgacaacat---aacttggcatactgtttatgaaattttggatgctttttttctcat |
3659129 |
T |
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| Q |
112 |
taaggagttctgtcctatgcaaatggctctaattctaatcattt-taaaatgctttattacacgttccaggggttaatagatcaagttatagggaaagga |
210 |
Q |
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| T |
3659128 |
-aaggagttttgtccaatgaaaaaggctgtaattctagtcatttgtaaaatgcttcattgtacgttctaaggtttaacagatcaagttatagggaaatca |
3659030 |
T |
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| Q |
211 |
agctccacttaatctgtttcaatctcttttctgcaaaaatgtgt |
254 |
Q |
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| T |
3659029 |
agctccacttaatctgtttcaatctcttatgtgcaaacatgtgt |
3658986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 3651083 - 3650941
Alignment:
| Q |
112 |
taaggagttctgtcctatgcaaatggctctaattctaatcattttaaaatgctttattacacgttccaggggttaatagatcaagttatagggaaaggaa |
211 |
Q |
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| T |
3651083 |
taaggagttctgtcctacgcaaatggatctaattctaatcattttaaaatgcttcattacacgttccaagggttagcagatcaagttacagggaaagcaa |
3650984 |
T |
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| Q |
212 |
gctccacttaatctgtttcaatctcttttctgcaaaaatgtgt |
254 |
Q |
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| T |
3650983 |
gctccacttaatctgtttcaatctcttttctgcaaaaatgtgt |
3650941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 3706454 - 3706596
Alignment:
| Q |
112 |
taaggagttctgtcctatgcaaatggctctaattctaatcattttaaaatgctttattacacgttccaggggttaatagatcaagttatagggaaaggaa |
211 |
Q |
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| T |
3706454 |
taaggagttctgtcctacgcaaatggatctaattctaatcattttaaaatgcttcattacacgttccaagggttagcagatcaagttacagggaaagcaa |
3706553 |
T |
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| Q |
212 |
gctccacttaatctgtttcaatctcttttctgcaaaaatgtgt |
254 |
Q |
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| T |
3706554 |
gctccacttaatctgtttcaatctcttttctgcaaaaatgtgt |
3706596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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