View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18227_low_4 (Length: 607)

Name: NF18227_low_4
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18227_low_4
NF18227_low_4
[»] chr7 (9 HSPs)
chr7 (18-595)||(7753914-7754494)
chr7 (268-388)||(38603001-38603122)
chr7 (316-388)||(19267369-19267441)
chr7 (267-371)||(30969763-30969868)
chr7 (268-384)||(37757468-37757585)
chr7 (268-384)||(37763216-37763333)
chr7 (316-389)||(34383352-34383426)
chr7 (318-366)||(28984151-28984199)
chr7 (316-384)||(29695175-29695243)
[»] chr6 (3 HSPs)
chr6 (265-388)||(14536112-14536236)
chr6 (265-385)||(14518617-14518736)
chr6 (314-385)||(7479007-7479082)
[»] chr1 (4 HSPs)
chr1 (265-388)||(51672453-51672576)
chr1 (316-388)||(8296173-8296245)
chr1 (285-366)||(18280457-18280539)
chr1 (317-384)||(36554247-36554311)
[»] chr3 (6 HSPs)
chr3 (320-388)||(41417140-41417208)
chr3 (266-345)||(26669181-26669261)
chr3 (314-384)||(8005056-8005127)
chr3 (317-388)||(44253034-44253104)
chr3 (335-388)||(47187649-47187702)
chr3 (239-346)||(49137563-49137671)
[»] chr5 (2 HSPs)
chr5 (267-384)||(18345696-18345814)
chr5 (265-373)||(11600902-11601010)
[»] chr4 (6 HSPs)
chr4 (257-387)||(29391157-29391284)
chr4 (316-388)||(23499438-23499510)
chr4 (265-388)||(8258825-8258948)
chr4 (265-388)||(8272243-8272366)
chr4 (317-385)||(9521880-9521948)
chr4 (317-361)||(36912767-36912811)
[»] chr2 (2 HSPs)
chr2 (339-388)||(1607790-1607839)
chr2 (316-388)||(3143241-3143313)
[»] chr8 (2 HSPs)
chr8 (339-387)||(7840408-7840455)
chr8 (316-372)||(39421523-39421579)


Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 18 - 595
Target Start/End: Original strand, 7753914 - 7754494
Alignment:
Q  18 gaaaatgttcacttctaaagattgtgcgaaagttcaaaggtatgtcgtcatatagttttttaaggttttatgacttcactctcatctgaaaaacacacga 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  7753914 gaaaatgttcacttctaaagattgtgcgacagttcaaaggtatgtcgtcgtatagttttttaaggttttatgacttcaatctcatttgaaaaacacacga 7754013  T
Q  118 tggaacaacaaattttgatattaaaaggtaatgaggagataattaatcggtaaatagaagtcaatttcaacttattccttaggctcgcataagttaattt 217  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7754014 tggaacaacaaattttgacattaaaaggtaatgaggagataattaatcattaaatagaagtcaatttcaacttattccataggctcgcataagttaattt 7754113  T
Q  218 tgaagttgttcctctatagtgaacaaatcattttttagcgtaaggtagacaatatcaattgttaattaacaaattaaatgttaatattgtagatactt-a 316  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7754114 tgaagttgttcctctaaagtgaacaaatcattttttagcgtaaggtggacaatatcaattgttaattaacaaattaaatgttaatattgtagatacttaa 7754213  T
Q  317 taacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagaggattttgttagatatattatgcctataaaac 416  Q
    ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7754214 taataaatcacgagtgtgttacaataacaacccttgattttctcattttacacttaactcactttagaggattttgttagatatattatgcctataaaac 7754313  T
Q  417 ttgaaaac--ctctgnnnnnnnnnnaaggaaggaacttgaaaacctctctgttagtctgctttatataatgagttaatttattattgataattaaattca 514  Q
    ||||||||  |||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7754314 ttgaaaacctctctgttttttttttaaggaaggaacttgaaaacctctctgttagtctgctttatataatgagttaatttattattgataattaaattca 7754413  T
Q  515 caacattgtaatttagtggatacaatagtgttctactcaaacttttcattgattgaactaaaatgatataacattagtgat 595  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7754414 caacattggaatttagtggatacaatagttttctactcaaacttttcattgattgaactaaaatgatataactttagtgat 7754494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 268 - 388
Target Start/End: Complemental strand, 38603122 - 38603001
Alignment:
Q  268 aatatcaattgttaattaacaaattaaatgttaatattgtagatac-ttataacaaatcacgagtgtgttacaataacaatccttgattttctcatttta 366  Q
    ||||||||  ||||||||| |||| ||| ||  ||||||||| ||| ||||||||||||| |||| ||||| |||||||| ||||||||||||   ||||    
T  38603122 aatatcaaccgttaattaaaaaatcaaaggtagatattgtaggtacattataacaaatcatgagtttgttaaaataacaacccttgattttcttgcttta 38603023  T
Q  367 cacttaactcactttagaggat 388  Q
    ||||| ||||||||||||||||    
T  38603022 cacttcactcactttagaggat 38603001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 316 - 388
Target Start/End: Original strand, 19267369 - 19267441
Alignment:
Q  316 ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagaggat 388  Q
    ||||||||||| |||| ||||| |||||||| |||||||||||||| ||||||||| ||||||||||||||||    
T  19267369 ataacaaatcatgagtttgttaaaataacaacccttgattttctcaatttacactttactcactttagaggat 19267441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 267 - 371
Target Start/End: Complemental strand, 30969868 - 30969763
Alignment:
Q  267 caatatcaattgttaattaacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatttt 365  Q
    |||||||||  |||||||||||||||||  ||| || |||||| ||  | ||||||||||| |||| |||||||||||||| |||||||||||||| |||    
T  30969868 caatatcaaccgttaattaacaaattaagggttgattttgtaggtatatcataacaaatcatgagtttgttacaataacaacccttgattttctcacttt 30969769  T
Q  366 acactt 371  Q
    ||||||    
T  30969768 acactt 30969763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 384
Target Start/End: Original strand, 37757468 - 37757585
Alignment:
Q  268 aatatcaattgttaattaacaaattaaatgttaatattgtagatac-ttataacaaatcacgagtgtgttacaataacaatccttgattttctcatttta 366  Q
    ||||||||| ||||||||| |||| ||| ||  ||||||||| ||| ||||||||| ||| |||| ||||| |||||||| | |||||||||||  ||||    
T  37757468 aatatcaatcgttaattaaaaaatcaaaggtagatattgtaggtacattataacaagtcatgagtttgttaaaataacaacctttgattttctcgcttta 37757567  T
Q  367 cacttaactcactttaga 384  Q
    ||||| ||| ||||||||    
T  37757568 cacttcactaactttaga 37757585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 384
Target Start/End: Original strand, 37763216 - 37763333
Alignment:
Q  268 aatatcaattgttaattaacaaattaaatgttaatattgtagatac-ttataacaaatcacgagtgtgttacaataacaatccttgattttctcatttta 366  Q
    ||||||||| ||||||||| |||| ||| ||  ||||||||| ||| ||||||||| ||| |||| ||||| |||||||| | |||||||||||  ||||    
T  37763216 aatatcaatcgttaattaaaaaatcaaaggtagatattgtaggtacattataacaagtcatgagtttgttaaaataacaacctttgattttctcgcttta 37763315  T
Q  367 cacttaactcactttaga 384  Q
    ||||| ||| ||||||||    
T  37763316 cacttcactaactttaga 37763333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 34383352 - 34383426
Alignment:
Q  316 ataacaaatcacgagtgtgttacaataacaatccttga-ttttctcattttacacttaactcactttagaggatt 389  Q
    ||||||||||| |||| ||||||||| |||||  |||| ||||||||||||| |||| | ||| |||||||||||    
T  34383352 ataacaaatcatgagtttgttacaatgacaatatttgatttttctcattttaaactttattcaatttagaggatt 34383426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 28984199 - 28984151
Alignment:
Q  318 aacaaatcacgagtgtgttacaataacaatccttgattttctcatttta 366  Q
    |||||||||||||| ||||| ||||| || |||||||||||||| ||||    
T  28984199 aacaaatcacgagtttgttataataataacccttgattttctcacttta 28984151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 29695243 - 29695175
Alignment:
Q  316 ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttaga 384  Q
    ||||||||||| |||| ||||| ||||||||| ||| |||||  ||||||||| || | ||||||||||    
T  29695243 ataacaaatcatgagtttgttataataacaattcttaatttttacattttacattttattcactttaga 29695175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 265 - 388
Target Start/End: Complemental strand, 14536236 - 14536112
Alignment:
Q  265 gacaatatcaattgttaattaacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatt 363  Q
    |||||||| ||||||||||||| |||||||| ||  ||||||||| ||| | |||||||||||||||| |||| ||||||||| | |||||||||||| |    
T  14536236 gacaatattaattgttaattaaaaaattaaaggtagatattgtaggtacatcataacaaatcacgagtttgttgcaataacaacctttgattttctcact 14536137  T
Q  364 ttacacttaactcactttagaggat 388  Q
    |||||||| |||| |||||||||||    
T  14536136 ttacacttcactcgctttagaggat 14536112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 265 - 385
Target Start/End: Complemental strand, 14518736 - 14518617
Alignment:
Q  265 gacaatatcaattgttaattaacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatt 363  Q
    ||||||||||| |||||||| | |||||||| |   ||||||||| ||| | ||||||||||| |||| | ||| ||||||||| ||||||||||||| |    
T  14518736 gacaatatcaactgttaatttaaaaattaaaggg--atattgtaggtacatcataacaaatcatgagtttcttataataacaattcttgattttctcact 14518639  T
Q  364 ttacacttaactcactttagag 385  Q
    |||||||| | |||||||||||    
T  14518638 ttacactttattcactttagag 14518617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 385
Target Start/End: Original strand, 7479007 - 7479082
Alignment:
Q  314 ttataacaaatcacgagtgtgttacaataacaa----tccttgattttctcattttacacttaactcactttagag 385  Q
    |||||||||||||||||| ||||| ||||||||    | ||||||||||||| ||||||||| | |||||||||||    
T  7479007 ttataacaaatcacgagtttgttaaaataacaactcttgcttgattttctcactttacactttattcactttagag 7479082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 265 - 388
Target Start/End: Complemental strand, 51672576 - 51672453
Alignment:
Q  265 gacaatatcaattgttaattaacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatt 363  Q
    |||||||||||  |||||||||||||||||| ||  |||||| |||||| | ||||||||||| |||| || ||||||||||| | ||||||||||||      
T  51672576 gacaatatcaaccgttaattaacaaattaaa-gtagatattgcagatacatcataacaaatcatgagtttgatacaataacaacctttgattttctcacg 51672478  T
Q  364 ttacacttaactcactttagaggat 388  Q
    |||||||||||||||||||||||||    
T  51672477 ttacacttaactcactttagaggat 51672453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 8296245 - 8296173
Alignment:
Q  316 ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagaggat 388  Q
    ||||||||||| || || ||||||||||||| |||||||||||||| |||| | |||||||||||||||||||    
T  8296245 ataacaaatcatgaatgagttacaataacaacccttgattttctcactttataattaactcactttagaggat 8296173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 366
Target Start/End: Original strand, 18280457 - 18280539
Alignment:
Q  285 aacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatttta 366  Q
    ||||||||||| || |||||||||  ||| | |||||||||||  | | |||||||||||||| |||||||||||||| ||||    
T  18280457 aacaaattaaaggtaaatattgtaagtacatcataacaaatcataaatatgttacaataacaacccttgattttctcacttta 18280539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 384
Target Start/End: Original strand, 36554247 - 36554311
Alignment:
Q  317 taacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttaga 384  Q
    |||||||||| || | |||||||||||||||   ||||||| |||||||| ||| |||||||||||||    
T  36554247 taacaaatcatgaatttgttacaataacaat---tgattttttcattttatactcaactcactttaga 36554311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 41417208 - 41417140
Alignment:
Q  320 caaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagaggat 388  Q
    |||||||||||| |||||||||||||| |||||||||||| | |||||||||  ||| |||||||||||    
T  41417208 caaatcacgagtttgttacaataacaacccttgattttcttactttacacttttctcgctttagaggat 41417140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 26669261 - 26669181
Alignment:
Q  266 acaatatcaattgttaattaacaaattaaatgttaatattgtagatac-ttataacaaatcacgagtgtgttacaataaca 345  Q
    ||||||||||||||||||||| |||||||  || || |||||| |||| | |||| |||||| |||| |||||||||||||    
T  26669261 acaatatcaattgttaattaataaattaagagtgaaaattgtatatacatcataataaatcatgagtttgttacaataaca 26669181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 8005056 - 8005127
Alignment:
Q  314 ttataacaaatcacgagtgtgttacaataacaatccttga-ttttctcattttacacttaactcactttaga 384  Q
    ||||||||||||| || | |||||||||||||| |||| | ||||| |||||||| ||| ||||||||||||    
T  8005056 ttataacaaatcatgaatttgttacaataacaacccttaatttttcacattttacgctttactcactttaga 8005127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 388
Target Start/End: Original strand, 44253034 - 44253104
Alignment:
Q  317 taacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagaggat 388  Q
    |||||||| |||||| ||||| |||||| | |||||||||| ||| ||||||||| | ||||||||||||||    
T  44253034 taacaaattacgagtttgttaaaataaccacccttgatttt-tcactttacacttcagtcactttagaggat 44253104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 47187702 - 47187649
Alignment:
Q  335 ttacaataacaatccttgattttctcattttacacttaactcactttagaggat 388  Q
    ||||||||||||  ||| ||||||||| ||||||||| |||| |||||||||||    
T  47187702 ttacaataacaactcttaattttctcactttacactttactcgctttagaggat 47187649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 346
Target Start/End: Original strand, 49137563 - 49137671
Alignment:
Q  239 aacaaatcattttttagcgtaaggtagacaatatcaattgttaattaacaaattaaatgttaatattgtagatac-ttataacaaatcacgagtgtgtta 337  Q
    ||||| ||||||| |||||| | || || |||||||| | ||||||||||||||||   | |||||||||| | | ||||| |||||||||||| | |||    
T  49137563 aacaattcattttatagcgtcaagtggataatatcaactattaattaacaaattaataataaatattgtaggtgcattatagcaaatcacgagtttatta 49137662  T
Q  338 caataacaa 346  Q
     ||||||||    
T  49137663 aaataacaa 49137671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 267 - 384
Target Start/End: Complemental strand, 18345814 - 18345696
Alignment:
Q  267 caatatcaattgttaattaacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatttt 365  Q
    |||||||||  ||||||||| |||| ||| ||  ||||||||| ||| | ||||||||||| |||| |||| ||||||||| |||||||||||  | |||    
T  18345814 caatatcaaccgttaattaataaatgaaaagtatatattgtaggtacgtcataacaaatcatgagtttgttgcaataacaacccttgattttcgtacttt 18345715  T
Q  366 acacttaactcactttaga 384  Q
    | |||| ||||||||||||    
T  18345714 atactttactcactttaga 18345696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 373
Target Start/End: Complemental strand, 11601010 - 11600902
Alignment:
Q  265 gacaatatcaattgttaattaacaaattaaatgttaatattgtagatac-ttataacaaatcacgagtgtgttacaataacaatccttgattttctcatt 363  Q
    |||||||||||| ||||||||||| |||||||||  |||||||| |||| |  |||||  | |||||| |||| | ||||||| | || ||||||||| |    
T  11601010 gacaatatcaatcgttaattaacatattaaatgtatatattgtaaatacatcgtaacaggttacgagtttgttgc-ataacaaccgttaattttctcact 11600912  T
Q  364 ttacacttaa 373  Q
    ||||||||||    
T  11600911 ttacacttaa 11600902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 257 - 387
Target Start/End: Complemental strand, 29391284 - 29391157
Alignment:
Q  257 gtaaggtagacaatatcaattgttaattaacaaattaaatgttaatattgtagatacttataacaaatcacgagtgtgttacaataacaatccttgattt 356  Q
    |||| |||| ||||||||| ||||||||||||||||||| |   ||||||||| |||  || | || | | |||| |||||||||||||| |||  ||||    
T  29391284 gtaaagtaggcaatatcaactgttaattaacaaattaaaggcatatattgtaggtac--atcataatt-atgagtttgttacaataacaaccctcaattt 29391188  T
Q  357 tctcattttacacttaactcactttagagga 387  Q
    ||| | ||||||||| |||||||||||||||    
T  29391187 tcttactttacactttactcactttagagga 29391157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 388
Target Start/End: Original strand, 23499438 - 23499510
Alignment:
Q  316 ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagaggat 388  Q
    ||||||||||| |||| ||||| |||||||| |||| ||||||||| ||||||||| |  ||||||| |||||    
T  23499438 ataacaaatcatgagtttgttaaaataacaacccttaattttctcactttacacttcagccactttaaaggat 23499510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 388
Target Start/End: Complemental strand, 8258948 - 8258825
Alignment:
Q  265 gacaatatcaattgttaattaacaaattaaatgttaatattgtag--atacttataacaaatcacgagtgtgttacaataacaatccttgattttctcat 362  Q
    |||||||| |||||| ||||||||||||||||||  |||||||||  ||| |  ||| |||| | |||  |||||||||||||| | |||| ||||||||    
T  8258948 gacaatataaattgtcaattaacaaattaaatgtagatattgtaggcata-tcgtaaaaaattatgagcttgttacaataacaacctttga-tttctcat 8258851  T
Q  363 tttacacttaactcactttagaggat 388  Q
    ||||| ||| |  |||||||||||||    
T  8258850 tttaccctttatccactttagaggat 8258825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 388
Target Start/End: Complemental strand, 8272366 - 8272243
Alignment:
Q  265 gacaatatcaattgttaattaacaaattaaatgttaatattgtag--atacttataacaaatcacgagtgtgttacaataacaatccttgattttctcat 362  Q
    |||||||| |||||| ||||||||||||||||||  |||||||||  ||| |  ||| |||| | |||  |||||||||||||| | |||| ||||||||    
T  8272366 gacaatataaattgtcaattaacaaattaaatgtagatattgtaggcata-tcgtaaaaaattatgagcttgttacaataacaacctttga-tttctcat 8272269  T
Q  363 tttacacttaactcactttagaggat 388  Q
    ||||| ||| |  |||||||||||||    
T  8272268 tttaccctttatccactttagaggat 8272243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 385
Target Start/End: Original strand, 9521880 - 9521948
Alignment:
Q  317 taacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagag 385  Q
    |||||||||| |||| ||||| | | |||| | |||||||||||| ||||||||| | |||||||||||    
T  9521880 taacaaatcatgagtttgttaaattgacaacctttgattttctcactttacactttagtcactttagag 9521948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 36912811 - 36912767
Alignment:
Q  317 taacaaatcacgagtgtgttacaataacaatccttgattttctca 361  Q
    |||||||||| |||| |||||| ||||||||| ||||||||||||    
T  36912811 taacaaatcatgagtttgttacgataacaatctttgattttctca 36912767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 339 - 388
Target Start/End: Complemental strand, 1607839 - 1607790
Alignment:
Q  339 aataacaatccttgattttctcattttacacttaactcactttagaggat 388  Q
    |||||||||| |||| ||||||||||||| ||| ||||||||||||||||    
T  1607839 aataacaatcattgaatttctcattttaccctttactcactttagaggat 1607790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 316 - 388
Target Start/End: Original strand, 3143241 - 3143313
Alignment:
Q  316 ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagaggat 388  Q
    ||||||||||| |||| ||||| ||||||||  |||||| |||||| ||||||  | | ||||||||||||||    
T  3143241 ataacaaatcaggagtttgttaaaataacaacacttgatattctcactttacaaattagtcactttagaggat 3143313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 7840408 - 7840455
Alignment:
Q  339 aataacaatccttgattttctcattttacacttaactcactttagagga 387  Q
    |||||||| |||||||||||| | |||||||||||||||||||||||||    
T  7840408 aataacaacccttgattttct-actttacacttaactcactttagagga 7840455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 39421579 - 39421523
Alignment:
Q  316 ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacactta 372  Q
    ||||||||||| |||| ||||| |||||||| | |||||||||||| ||||||||||    
T  39421579 ataacaaatcatgagtttgttaaaataacaacctttgattttctcactttacactta 39421523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University