View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_low_41 (Length: 242)
Name: NF18227_low_41
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 45611967 - 45611723
Alignment:
| Q |
2 |
atcccttatatttcatcaaattattagtgatctattgaggtgtcaagaccacaatgtctttggnnnnnnn--catatgcagacactaac----ataaaca |
95 |
Q |
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| T |
45611967 |
atcccttatatttcctcaaattattagtgatctattgaggtgtcaagaccacaatgtctttggtttttttttcatatgtagacactaactaacataaaca |
45611868 |
T |
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| Q |
96 |
tgagaaaaattggcttttgcgaaacttgttgtgatatcttcggtaatggaagccacatttgattctaaacacggaaattttcgacctcctgagtttccta |
195 |
Q |
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| T |
45611867 |
tgaggaaaattgacttttctgaaacttgttgtgatatcttcggtaatagaagccacatttgattttaaacattgaaaattccaacctcctgaatttccta |
45611768 |
T |
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| Q |
196 |
gcagatcgtgttacaactttcttgagacggacaaaagagcctttg |
240 |
Q |
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| T |
45611767 |
gcagatcgtattacaactttcctgagacggacaaaagagcctttg |
45611723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 79 - 240
Target Start/End: Complemental strand, 45609553 - 45609392
Alignment:
| Q |
79 |
agacactaacataaacatgagaaaaattggcttttgcgaaacttgttgtgatatcttcggtaatggaagccacatttgattctaaacacggaaattttcg |
178 |
Q |
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||||||||| ||||||| ||| ||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| ||||||| |||| || | |
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| T |
45609553 |
agacactaatataaacacgaggaaaattggcttttccgaaacttattgtgatatcttcggtaatagaagccacatttgattttaaacacagaaaattcca |
45609454 |
T |
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| Q |
179 |
acctcctgagtttcctagcagatcgtgttacaactttcttgagacggacaaaagagcctttg |
240 |
Q |
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| T |
45609453 |
acctcctgagtttcctagcagatcgtattacaacttttctgagacggacaaaagagcctttg |
45609392 |
T |
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