View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18227_low_44 (Length: 234)
Name: NF18227_low_44
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_44 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 217
Target Start/End: Complemental strand, 43957444 - 43957250
Alignment:
| Q |
23 |
ccatacaatacaaatcatatgcttcgacaatactaactaaacagagatctaactgtctaaccaactctaaccctattcccatttattcttctgggtccta |
122 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43957444 |
ccatacaacacaaatcatatgcttcgacaatactaactgaacagagatctaactgtctaaccaactctaaccctattcccatttattcttctgggtccta |
43957345 |
T |
|
| Q |
123 |
tcattaactcattccctaaaactattgtattttctcagtgtttttatggtgcatactgtttttatccagtactaacataaactgtttgtgttttg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43957344 |
tcattaactcattccctaaaactattgtattttctcagtgtttttatggtgcatactgtttttatccagtactaacataaactgtttgtgttttg |
43957250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 3843944 - 3843884
Alignment:
| Q |
56 |
taactaaacagagatctaactgtctaaccaactctaaccctattcccatttattcttctgg |
116 |
Q |
| |
|
||||||||| || | ||||||||||||| |||||||||||| ||||||| |||| |||||| |
|
|
| T |
3843944 |
taactaaactgacaactaactgtctaactaactctaaccctgttcccatgtattattctgg |
3843884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 49748383 - 49748333
Alignment:
| Q |
54 |
actaactaaacagagatctaactgtctaaccaactctaaccctattcccat |
104 |
Q |
| |
|
||||||| |||||||||||||||||||||| | || | ||||||||||||| |
|
|
| T |
49748383 |
actaacttaacagagatctaactgtctaactagctttgaccctattcccat |
49748333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University