View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_low_46 (Length: 228)
Name: NF18227_low_46
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 17644906 - 17644692
Alignment:
| Q |
1 |
caatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaagaagaggaccata |
100 |
Q |
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| T |
17644906 |
caatgttcagcggcgttgagtcttgaaagtttctcatggaagtagatactggaaacccagaaagattactttgtgaattgttaacaaggagaggaccaga |
17644807 |
T |
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| Q |
101 |
aataggatgcacatgatgtcttggtactggaggcgaaaactgaaccggaaccggttgccttgatgcatttgattcatttcctgtaatgttcttaattaaa |
200 |
Q |
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| T |
17644806 |
aataggatgcacatgatgtcttggtactggaggcgaaaactgaaccggaactggttgccttgatgcatttgattcatttcctgtaatgttcttaattaaa |
17644707 |
T |
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| Q |
201 |
ctcttgaattcatct |
215 |
Q |
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| T |
17644706 |
ctcttgaattcatct |
17644692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 17631251 - 17631164
Alignment:
| Q |
128 |
tggaggcgaaaactgaaccggaaccggttgccttgatgcatttgattcatttcctgtaatgttcttaattaaactcttgaattcatct |
215 |
Q |
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| T |
17631251 |
tggagccgaaacctgaactggatctggtggccttaatgcatttgatttatttcccgtaatgtgctgaacaaaactcttgaattcatct |
17631164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 17645435 - 17645336
Alignment:
| Q |
21 |
tcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaagaagaggaccataaataggatgcacatgatgtc |
120 |
Q |
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| T |
17645435 |
tcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattctgtgaattgtaaacaagagaaggacgagtaataggttgcacatgatgtc |
17645336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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