View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18227_low_5 (Length: 596)

Name: NF18227_low_5
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18227_low_5
NF18227_low_5
[»] chr1 (6 HSPs)
chr1 (408-586)||(6154786-6154964)
chr1 (173-323)||(6155049-6155199)
chr1 (212-284)||(6153594-6153665)
chr1 (214-292)||(1356271-1356348)
chr1 (212-292)||(35202351-35202430)
chr1 (20-55)||(6155289-6155324)
[»] chr5 (4 HSPs)
chr5 (408-583)||(34044207-34044382)
chr5 (212-323)||(34044010-34044121)
chr5 (212-284)||(34044924-34044996)
chr5 (350-383)||(34044148-34044181)
[»] chr2 (1 HSPs)
chr2 (211-323)||(38934602-38934715)
[»] chr4 (1 HSPs)
chr4 (212-291)||(20284068-20284146)
[»] chr8 (1 HSPs)
chr8 (212-313)||(33520848-33520948)
[»] chr3 (1 HSPs)
chr3 (212-284)||(4523176-4523247)
[»] chr6 (1 HSPs)
chr6 (217-284)||(4275075-4275141)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 4e-89; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 408 - 586
Target Start/End: Complemental strand, 6154964 - 6154786
Alignment:
Q  408 cttccttctctctcgtttggatttcagcagacccaggaaaaattaagaacccatttcactgtaattaagaaaaccacgatcgttgccgaccaaacccagt 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  6154964 cttccttctctctcgtttggatttcagcagacccaggaaaaattaagaacccatttcactgtaattaagaaaaccatgatcgttgccgacaaaacccagt 6154865  T
Q  508 cacttcgtcgaccgccgccgttgtcgtattgtcaaacatgaggttgccatcactgttccttgtgttactgttgtttcat 586  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6154864 cactccgtcgaccgccgccgttgtcgtattgtcaaacatgaggttgccatcactgttccttgtgttactgttgtttcat 6154786  T

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Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 173 - 323
Target Start/End: Complemental strand, 6155199 - 6155049
Alignment:
Q  173 gtgttgaacgagtattcaggaatatgagatgtacaaatagggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaac 272  Q
    |||||||| ||||||| ||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6155199 gtgttgaaggagtattgaggaatatgagatgtacaaacggggtgcagatcctctccatttgtagagaaaatggccaatctcaatttccactcataaaaac 6155100  T
Q  273 atgacatgtggataagtaaaaatggacggttctgattcattcaatgaatta 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6155099 atgacatgtggataagtaaaaatggacggttctgattcattcaatgaatta 6155049  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 6153594 - 6153665
Alignment:
Q  212 gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtgga 284  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  6153594 gggtgcagatcctctccatttgtagagaaaatggccaat-tcaatttccactcataaaaacatgacacgtgga 6153665  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 1356271 - 1356348
Alignment:
Q  214 gtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaa 292  Q
    ||||||||||||||||||||| |   |||| | ||||||||||||||  ||||||||||| |||| |||||||||||||    
T  1356271 gtgcagatcctctccatttgtggtagaaattg-caatctcaatttcctttcataaaaacaagacacgtggataagtaaa 1356348  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 35202430 - 35202351
Alignment:
Q  212 gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaa 292  Q
    ||||||||||||||||||||||  | | |||||||| ||||||||||||  ||||||||||| ||||  | ||||||||||    
T  35202430 gggtgcagatcctctccatttggtgaggaaatggcc-atctcaatttcctttcataaaaacaagacacatcgataagtaaa 35202351  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 6155324 - 6155289
Alignment:
Q  20 gagttttgttagcctttcttcttgtatttttcaagg 55  Q
    |||||| |||||||||||||||||||||||||||||    
T  6155324 gagtttcgttagcctttcttcttgtatttttcaagg 6155289  T

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Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 408 - 583
Target Start/End: Original strand, 34044207 - 34044382
Alignment:
Q  408 cttccttctctctcgtttggatttcagcagacccaggaaaaattaagaacccatttcactgtaattaagaaaaccacgatcgttgccgaccaaacccagt 507  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34044207 cttccttctctctcgtttggatttcagcagacccgggaaaaattaagaacctatttcactgtaattaagaaaaccacgatcgttgccgaccaaacccagt 34044306  T
Q  508 cacttcgtcgaccgccgccgttgtcgtattgtcaaacatgaggttgccatcactgttccttgtgttactgttgttt 583  Q
    |||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||    
T  34044307 cactccgtcgaccgccgccgttgtcgtatggtcaaacatgaggttgtcatcactgttccttgtgttattgttgttt 34044382  T

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Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 212 - 323
Target Start/End: Original strand, 34044010 - 34044121
Alignment:
Q  212 gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaaaatggacggttctgattca 311  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34044010 gggtgcagatcctctccatttgtagagaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaaaatggacggttcttattca 34044109  T
Q  312 ttcaatgaatta 323  Q
    ||||||||||||    
T  34044110 ttcaatgaatta 34044121  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 34044996 - 34044924
Alignment:
Q  212 gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtgga 284  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  34044996 gggtgcaaatcctctccatttgtagagaaaatggccaatctcaatttccactcataaaaacatgacacgtgga 34044924  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Original strand, 34044148 - 34044181
Alignment:
Q  350 gataaacaaaacattgaaaaccacaccacttctg 383  Q
    ||||||||||||||||||||||||||| ||||||    
T  34044148 gataaacaaaacattgaaaaccacaccgcttctg 34044181  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 38934715 - 38934602
Alignment:
Q  211 agggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaa-aatggacggttctgatt 309  Q
    |||||||| |||||||||||||   | ||||||||| ||||||||||||||||| |||||| | |||||||| | ||  ||| |||  |||||||||||     
T  38934715 agggtgcaaatcctctccattttgtgagaaaatggcaaatctcaatttccactcctaaaaataagacatgtgtaaaataaaacaatcaacggttctgata 38934616  T
Q  310 cattcaatgaatta 323  Q
    ||||||| ||||||    
T  38934615 cattcaaagaatta 38934602  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 20284146 - 20284068
Alignment:
Q  212 gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaa 291  Q
    ||||||||||||||| ||||||| |  |||||||| |||||||||||||| || ||| |||| |||| ||||||||||||    
T  20284146 gggtgcagatcctctacatttgtggaaaaaatggc-aatctcaatttccattcttaagaacaagacacgtggataagtaa 20284068  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 212 - 313
Target Start/End: Complemental strand, 33520948 - 33520848
Alignment:
Q  212 gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaaaatggacggttctgattca 311  Q
    ||||||||||||||||||||||  | | |||||||| ||| ||||||||  | ||||||||| |||| ||||||||||  ||||  | ||||||||||||    
T  33520948 gggtgcagatcctctccatttggtgaggaaatggcc-atcacaatttcctttaataaaaacaggacacgtggataagttgaaatcaatggttctgattca 33520850  T
Q  312 tt 313  Q
    ||    
T  33520849 tt 33520848  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 4523176 - 4523247
Alignment:
Q  212 gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtgga 284  Q
    |||||||||||||||||||||   | | ||||| | |||||||||||||| ||||||||||| ||||||||||    
T  4523176 gggtgcagatcctctccattttatgaggaaatgac-aatctcaatttccaatcataaaaacaagacatgtgga 4523247  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 4275075 - 4275141
Alignment:
Q  217 cagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtgga 284  Q
    ||||||||||||||||     ||||||||| |||||||||||||| |||||||||||||||| |||||    
T  4275075 cagatcctctccatttaggtagaaaatggc-aatctcaatttccattcataaaaacatgacacgtgga 4275141  T

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