View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_low_50 (Length: 204)
Name: NF18227_low_50
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_50 |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 28687670 - 28687846
Alignment:
| Q |
18 |
ataaaatatcatctagaaagtatttaaggaaattctagaaggaaaaatatgacttaccttcaacgttcattacaacaagaaataggaaaataaagataat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28687670 |
ataaaatatcatctagaaagtatttaaggaaattctagaaggaaaaatatgacttaccttcaacgttcattacaacaagaaatagaaaaataaagataat |
28687769 |
T |
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| Q |
118 |
tataacacaatcatacttcacattttcaaccatatttttctcttatgacttatgaaatagaatatgttcttctcact |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| |
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| T |
28687770 |
tataacacaatcatacttcacattttcaaccatatttttctcttgggacgtatgaaatagaatatgttcttatcact |
28687846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 28701595 - 28701760
Alignment:
| Q |
18 |
ataaaatatcatctagaaagtatttaaggaaattctagaagga-aaaatatgacttaccttcaacgttcattacaacaagaaataggaaaataaagataa |
116 |
Q |
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||||||||| || |||||||||| ||||||||||||||||||| |||| ||| ||||||||||| ||||| || ||||||||||| |||||||||||| |
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| T |
28701595 |
ataaaatattatttagaaagtatctaaggaaattctagaaggacaaaaaatggattaccttcaacaatcattgcagcaagaaatagggaaataaagataa |
28701694 |
T |
|
| Q |
117 |
ttataacacaatcatacttcacattttcaaccatatttttctcttatgacttatgaaatagaatat |
182 |
Q |
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||||||||||| || | |||||| ||| ||||||||||||| | | ||| ||||||||||||||| |
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| T |
28701695 |
ttataacacaaacaaatttcacagtttgaaccatatttttcccctgtgatgtatgaaatagaatat |
28701760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 194
Target Start/End: Original strand, 28719145 - 28719304
Alignment:
| Q |
35 |
aagtatttaaggaaattctagaaggaaaaatatgacttaccttcaacgttcattacaacaagaaataggaaaataaagataattataacacaatcatact |
134 |
Q |
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|||||| ||||| |||| ||||||||||| ||| | |||||||||||||| || ||| || ||||||| |||||||||||||||||||| || || ||| |
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| T |
28719145 |
aagtatctaagggaattaaagaaggaaaaaaatggcataccttcaacgttctttgcaataaaaaatagggaaataaagataattataacataaacaaact |
28719244 |
T |
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| Q |
135 |
tcacattttcaaccatatttttctcttatgacttatgaaatagaatatgttcttctcact |
194 |
Q |
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||||| ||| |||||| |||||| | | |||| |||| |||||||| |||| || ||||| |
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| T |
28719245 |
tcacaattttaaccatgtttttcccctctgacgtatgcaatagaatttgtttttatcact |
28719304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 28711862 - 28712036
Alignment:
| Q |
18 |
ataaaatatcatctagaaagtatttaaggaaattctagaagga-aaaatatgacttaccttcaacgttcattacaacaagaaataggaaaataaagataa |
116 |
Q |
| |
|
||||||||| || |||||||||| |||| ||||| |||||| |||| ||||||||||||||||||| | || ||||||||| | ||||||| |||| |
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| T |
28711862 |
ataaaatattatgtagaaagtatctaagaaaattgaagaagggcaaaaaatgacttaccttcaacgtt---tgcaccaagaaataaggaaataaaaataa |
28711958 |
T |
|
| Q |
117 |
ttataacacaatcatacttcacattttcaaccatatttttctcttatgacttatgaaatagaatatgttcttctcact |
194 |
Q |
| |
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|||||||| || || |||||||| |||||||||| |||| | | |||||| |||| ||| ||||||||| || ||||| |
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| T |
28711959 |
ttataacataaacaaacttcacaatttcaaccatgttttccccctatgacgtatgcaattgaatatgtttttatcact |
28712036 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 12614224 - 12614307
Alignment:
| Q |
71 |
ttaccttcaacgttcattacaacaagaaataggaaaataaagataattataacacaatcatacttcacattttcaaccatattt |
154 |
Q |
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||||||||||||||| || ||||||||||||| |||||||||||| |||||| |||| || |||| ||| |||||||||||||| |
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| T |
12614224 |
ttaccttcaacgttcgttgcaacaagaaatagaaaaataaagatatttataatacaaacaaacttgacaatttcaaccatattt |
12614307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 12731452 - 12731505
Alignment:
| Q |
71 |
ttaccttcaacgttcattacaacaagaaataggaaaataaagataattataaca |
124 |
Q |
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||||| |||||||||||| ||| | |||||||| |||||||||||||||||||| |
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| T |
12731452 |
ttaccgtcaacgttcattgcaaaaggaaatagggaaataaagataattataaca |
12731505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 19199253 - 19199164
Alignment:
| Q |
66 |
atgacttaccttcaacgttcattacaacaagaaataggaaaataaagataattataacacaatcatacttcacattttcaaccatatttt |
155 |
Q |
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||||| |||| ||||| |||||| || ||| ||| || ||||||||||||| |||||| || || |||| ||| ||||||||||||||| |
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| T |
19199253 |
atgacataccatcaacattcattgcaccaaaaaacagagaaataaagataatcataacataaacaaacttaacaatttcaaccatatttt |
19199164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 24846 - 24947
Alignment:
| Q |
56 |
aaggaaaaatatgacttaccttcaacgttcattacaacaagaaataggaaaataaagataattataacacaatcatacttcacattttcaaccatatttt |
155 |
Q |
| |
|
||||| ||| ||| |||||| ||||| ||| ||||||||||||||||| ||| ||| ||||| |||||| || | | || ||| ||||||||||||||| |
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| T |
24846 |
aaggataaaaatggcttaccatcaaccttcgttacaacaagaaatagggaaaaaaatataatcataacataaataaatttaacaatttcaaccatatttt |
24945 |
T |
|
| Q |
156 |
tc |
157 |
Q |
| |
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|| |
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|
| T |
24946 |
tc |
24947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 16715855 - 16715938
Alignment:
| Q |
71 |
ttaccttcaacgttcattacaacaagaaataggaaaataaagataattataacacaatcatacttcacattttcaaccatattt |
154 |
Q |
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|
||||||||||| ||| || |||| ||||| || |||||||||||| |||||| | || || |||| ||| |||||||||||||| |
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| T |
16715855 |
ttaccttcaacattcgttgcaactagaaaaagaaaaataaagatatttataatataaacaaacttgacaatttcaaccatattt |
16715938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 20143619 - 20143700
Alignment:
| Q |
70 |
cttaccttcaacgttcattacaacaagaaataggaaaataaagataattataacacaatcatacttcacattttcaaccata |
151 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| ||| ||| ||||| |||||| || ||||||| ||| ||||| ||||| |
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|
| T |
20143619 |
cttaccttcaatattcattgcaacaagaaatagagaaagaaatataataataacataaacatacttgacaatttcagccata |
20143700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 17877296 - 17877376
Alignment:
| Q |
70 |
cttaccttcaacgttcattacaacaagaaataggaaaataaagataattataacacaatcatacttcacattttcaaccat |
150 |
Q |
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||||||||||| ||| || ||||||||||||| ||| ||| ||||| |||||| || ||||||| ||| |||||||||| |
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| T |
17877296 |
cttaccttcaatattcgttgcaacaagaaatagagaaagaaatataataataacataaacatacttgacaatttcaaccat |
17877376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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