View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18227_low_6 (Length: 530)

Name: NF18227_low_6
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18227_low_6
NF18227_low_6
[»] chr2 (2 HSPs)
chr2 (18-358)||(43622076-43622409)
chr2 (417-445)||(43621989-43622017)
[»] chr5 (1 HSPs)
chr5 (417-448)||(3154681-3154712)
[»] chr7 (2 HSPs)
chr7 (418-448)||(34690962-34690992)
chr7 (419-448)||(10014993-10015022)
[»] chr8 (3 HSPs)
chr8 (419-448)||(14531625-14531654)
chr8 (419-448)||(29913568-29913597)
chr8 (420-448)||(34037524-34037552)
[»] chr6 (1 HSPs)
chr6 (419-448)||(736858-736887)
[»] chr4 (1 HSPs)
chr4 (419-448)||(32464642-32464671)
[»] chr3 (1 HSPs)
chr3 (419-448)||(21239116-21239145)


Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 43622409 - 43622076
Alignment:
Q  18 gtgtcttggggctctgtttggatgcaaacgttccaattccattgtaggctatcttctatcaactttgatcactatagcaattctttgcgttttgcgtttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43622409 gtgtcttggggctctgtttggatgcaaacgttccaattccattgtaggctatcttctatcaactttgatcactatagcaattctttgcgttttgcgtttg 43622310  T
Q  118 ctatgttatggattttatcggtttctaaagaggagagattcttgcattgctgaacaacaaaatggtagcttacaagtgcaatcagaaaatacaaggcatt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  43622309 ctatgttatggattttatcggtttctaaagaggagagattcttgcattgctgaacaacaaaatggtagcttacaagtgcaatcagaaaatacaaggcaat 43622210  T
Q  218 agattcttctattatcttgctccatcataatcataatcgtaatcataatcttctaattgtaataatttgttgaataagagcttctctacaatannnnnnn 317  Q
    ||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  43622209 agattcttctattatcttgctccatcataatcat------aatcataatcttctaattgtaataatttgttgaataagagcttctctacaata-tatttt 43622117  T
Q  318 nnnnaaaatgtataatctgcttgatttttactcgatataaa 358  Q
        |||||||||||||||||| ||||||||||||||||||    
T  43622116 ttttaaaatgtataatctgctttatttttactcgatataaa 43622076  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 445
Target Start/End: Complemental strand, 43622017 - 43621989
Alignment:
Q  417 gtaatgatatttgtacaactattttatga 445  Q
    |||||||||||||||||||||||||||||    
T  43622017 gtaatgatatttgtacaactattttatga 43621989  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 448
Target Start/End: Complemental strand, 3154712 - 3154681
Alignment:
Q  417 gtaatgatatttgtacaactattttatgataa 448  Q
    ||||||||||||||||||||||||||||||||    
T  3154712 gtaatgatatttgtacaactattttatgataa 3154681  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 34690992 - 34690962
Alignment:
Q  418 taatgatatttgtacaactattttatgataa 448  Q
    |||||||||||||||||||||||||||||||    
T  34690992 taatgatatttgtacaactattttatgataa 34690962  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 448
Target Start/End: Complemental strand, 10015022 - 10014993
Alignment:
Q  419 aatgatatttgtacaactattttatgataa 448  Q
    ||||||||||||||||||||||||||||||    
T  10015022 aatgatatttgtacaactattttatgataa 10014993  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 448
Target Start/End: Original strand, 14531625 - 14531654
Alignment:
Q  419 aatgatatttgtacaactattttatgataa 448  Q
    ||||||||||||||||||||||||||||||    
T  14531625 aatgatatttgtacaactattttatgataa 14531654  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 448
Target Start/End: Original strand, 29913568 - 29913597
Alignment:
Q  419 aatgatatttgtacaactattttatgataa 448  Q
    ||||||||||||||||||||||||||||||    
T  29913568 aatgatatttgtacaactattttatgataa 29913597  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 448
Target Start/End: Complemental strand, 34037552 - 34037524
Alignment:
Q  420 atgatatttgtacaactattttatgataa 448  Q
    |||||||||||||||||||||||||||||    
T  34037552 atgatatttgtacaactattttatgataa 34037524  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 448
Target Start/End: Complemental strand, 736887 - 736858
Alignment:
Q  419 aatgatatttgtacaactattttatgataa 448  Q
    ||||||||||||||||||||||||||||||    
T  736887 aatgatatttgtacaactattttatgataa 736858  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 448
Target Start/End: Complemental strand, 32464671 - 32464642
Alignment:
Q  419 aatgatatttgtacaactattttatgataa 448  Q
    ||||||||||||||||||||||||||||||    
T  32464671 aatgatatttgtacaactattttatgataa 32464642  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 448
Target Start/End: Complemental strand, 21239145 - 21239116
Alignment:
Q  419 aatgatatttgtacaactattttatgataa 448  Q
    ||||||||||||||||||||||||||||||    
T  21239145 aatgatatttgtacaactattttatgataa 21239116  T

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