View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18227_low_7 (Length: 514)
Name: NF18227_low_7
Description: NF18227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18227_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 70 - 506
Target Start/End: Complemental strand, 32895882 - 32895446
Alignment:
| Q |
70 |
aggctttatttactgcatagctaattttaggtcttgtgatggttgcatcctaaaatgcacctacaggctacaatagatccgaagaatgtgacatcttcac |
169 |
Q |
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| T |
32895882 |
aggctttatttactgcatagctaattttaggtcttgtgatggttgcatcctaaaatgcacctacaggctacaatagatccgaagaatgtgacatcttcac |
32895783 |
T |
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| Q |
170 |
aataatttgatatcaaagttagttttatgcactaatgaataacacaataatttaacattaacaatttcaaaatttatattgtgcttaatgaaacatgttc |
269 |
Q |
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| T |
32895782 |
aataatttgatatcaaagttagttttatgcactaatgaataacacaataatttaacattaacaatttctaaatttatattgtgcttaatgaaacatgttc |
32895683 |
T |
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| Q |
270 |
tattatgagctgaaacataattctttatatatttgacaacttgacataagaaacaaagctatcattcatgcttttttctgtttatcttatggtggtggaa |
369 |
Q |
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| T |
32895682 |
tattatgagctgaaacataatgcttgatatatttgacaacttgacataagaaacaaagctatcattcatgcttttttctgtttatcttatggtggtggaa |
32895583 |
T |
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| Q |
370 |
agatagctttaaccaagcagtgctgaaaagtaaatatgagtggattcaaattactcgactcttttcagttaaattagactctactgcaagagtcactgca |
469 |
Q |
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| T |
32895582 |
agatagctttaaccaggcagtgttgaaaagtaaatatgagtgaattcaaattactcgactcttttcagttaaattagactctactgcaagagtcactgca |
32895483 |
T |
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| Q |
470 |
tgttattgttatgtatctctatttatgtgagaattat |
506 |
Q |
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| T |
32895482 |
tgttattgttatgtatctctatttatgtgagaattat |
32895446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 32895918 - 32895882
Alignment:
| Q |
17 |
acttggtaaagattaaaatgttgttgttataatccaa |
53 |
Q |
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| T |
32895918 |
acttggtaaagattaaaatgttgttgttataatccaa |
32895882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 381
Target Start/End: Complemental strand, 32892550 - 32892503
Alignment:
| Q |
334 |
ttcatgcttttttctgtttatcttatggtggtggaaagatagctttaa |
381 |
Q |
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| T |
32892550 |
ttcatgcttttttctgtttaacttctggtggggggaagatagctttaa |
32892503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 407 - 472
Target Start/End: Complemental strand, 16753349 - 16753284
Alignment:
| Q |
407 |
gagtggattcaaattactcgactcttttcagttaaattagactctactgcaagagtcactgcatgt |
472 |
Q |
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| T |
16753349 |
gagtggattcaagttaattgactcttttcgattaaatcagactctattgcacgagtcactgcatgt |
16753284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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