View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18228_high_10 (Length: 478)
Name: NF18228_high_10
Description: NF18228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18228_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 5 - 468
Target Start/End: Complemental strand, 25633100 - 25632638
Alignment:
| Q |
5 |
aattttgttcttctgtgttctttcttttcatcatgcctccaagagttgttcctgctcatcttcaacaagataatgattctgcgttcttcatacaccctag |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25633100 |
aattttgttcttctgtgttctttcttttcatcatgcctccaagagttgttcctgctcatcttcaacaagataatgattctgcgttcttcgtacaccctag |
25633001 |
T |
|
| Q |
105 |
cgaaggtcctaattctctaattgtttctccaaagcttgatggttctaattaccttgcttggagtcgatctatgaaacgcgcattgggaaggaagaacaaa |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
25633000 |
ggaaggtcctaattctctaattgtttctccaaagcttgatggttctaattaccttgcttggaatcgatctatgaaacgcgcattgggaacgaagaacaaa |
25632901 |
T |
|
| Q |
205 |
ttagggttcatcaatgccactatattcctcaattgtgttaattgagtgaaagtgaaagtgaataattgtgttaactgttatattcaattgagatcgaacc |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25632900 |
ttagggttcatcaatgccactatattcctcaattgtgttaattgagttaaagtgaaagtaaataattgtgttaactgttatattcaattgagatcgaacc |
25632801 |
T |
|
| Q |
305 |
aacaagtgaactgatatgaattgtattgagctcaatttaaattcaattttacaacccatcccaccaaagcaaaaggcttgtagtaagaacatgcaattgt |
404 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25632800 |
aacaagtgaactgatatgaattatattgagctcaatttaaattcaattttacaacccatcccaccaaagcaaaaggcttgtagtaagaacatgcaattgt |
25632701 |
T |
|
| Q |
405 |
tgattcacattgaaaatgttggtgagtgaaagcacgtaataacctcccatgcatgaaacctatg |
468 |
Q |
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| T |
25632700 |
tgattcacattgaaaatgttggtgagtggaagcacgtaat-acctcccatgcatgaaacctatg |
25632638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 191
Target Start/End: Original strand, 19229482 - 19229635
Alignment:
| Q |
31 |
ttcatcatgcctccaagagttgttcctgctcatcttcaacaagataatgattctgcgttcttcatacaccctagcgaaggtcctaattctctaattgttt |
130 |
Q |
| |
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||||||||||||||||||| |||||| | || ||||||||||||| ||||| |||||| || | || ||||| ||||| || |||||||||| |||| |
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| T |
19229482 |
ttcatcatgcctccaagagcagttcctacacaccttcaacaagatattgattatgcgttttttgttcatcctagtgaaggaccaaattctctaaccgttt |
19229581 |
T |
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| Q |
131 |
ctccaaagcttgatggttctaattaccttgcttggagtcgatctatgaaacgcgcattggg |
191 |
Q |
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||| ||||| |||| ||||||||||||| ||| |||||| || |||||||||| |
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| T |
19229582 |
gtcctaagctcaatgg-------taccttgcttggaatcgttctatgcaatgcgcattggg |
19229635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 25644182 - 25644127
Alignment:
| Q |
287 |
ttcaattgagatcgaaccaacaagtgaactgatatgaattgtattgagctcaattt |
342 |
Q |
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||||| || ||| ||||||||||||||||||||| | ||||||| ||||||||||| |
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| T |
25644182 |
ttcaaatgggattgaaccaacaagtgaactgataaggattgtatcgagctcaattt |
25644127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 18483685 - 18483632
Alignment:
| Q |
151 |
aattaccttgcttggagtcgatctatgaaacgcgcattgggaaggaagaacaaa |
204 |
Q |
| |
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|||||| | ||||||||||| || |||||||||||||||||| |||||||||| |
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| T |
18483685 |
aattacttagcttggagtcgttcgatgaaacgcgcattgggagcgaagaacaaa |
18483632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 413
Target Start/End: Complemental strand, 25644121 - 25644073
Alignment:
| Q |
365 |
ccaccaaagcaaaaggcttgtagtaagaacatgcaattgttgattcaca |
413 |
Q |
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|||||||| ||||| | || |||||||||||||||||||||||| |||| |
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| T |
25644121 |
ccaccaaaacaaaacgtttatagtaagaacatgcaattgttgatgcaca |
25644073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 34 - 220
Target Start/End: Original strand, 11922442 - 11922637
Alignment:
| Q |
34 |
atcatgcctccaagagttgttcctgctcatcttcaacaa---------gataatgattctgcgttcttcatacaccctagcgaaggtcctaattctctaa |
124 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||| |||||||||| || || ||| | |||| ||| |||||| | |||||||| |
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| T |
11922442 |
atcatgcttccacgagttgttcctgctcatcttcaacaaccgaatcaagataatgattatgattttttcgtgcacctaagcaaaggtctcagttctctaa |
11922541 |
T |
|
| Q |
125 |
ttgtttctccaaagcttgatggttctaattaccttgcttggagtcgatctatgaaacgcgcattgggaaggaagaacaaattagggttcatcaatg |
220 |
Q |
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|||||||||||||||| ||||||| |||||| |||| |||| || ||||||| ||| | | ||||||| |||||||||||||||||| ||||||| |
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| T |
11922542 |
ctgtttctccaaagcttaatggttccaattacattgcatggaatcaatctatgcaacacaccttgggaaagaagaacaaattagggtttatcaatg |
11922637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 42134082 - 42134135
Alignment:
| Q |
151 |
aattaccttgcttggagtcgatctatgaaacgcgcattgggaaggaagaacaaa |
204 |
Q |
| |
|
|||||| | ||||||||||| || |||||||||||||||||| |||||||||| |
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| T |
42134082 |
aattacttagcttggagtcgttcgatgaaacgcgcattgggagcgaagaacaaa |
42134135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 20071300 - 20071491
Alignment:
| Q |
29 |
ttttcatcatgcctccaagagttgttcctgctcatcttcaacaagataatgattctgcgttcttcatacaccctagcgaaggtcctaattctctaattgt |
128 |
Q |
| |
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||||||||||||||||||||| |||| || |||||||||||||||| ||||| ||| |||||| | || | | |||||| |||||| |||| || |
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| T |
20071300 |
ttttcatcatgcctccaagagaagttcttgtacatcttcaacaagatactgattttgcattcttcgttcatcaaaatgaaggtgtcaattctttaatcgt |
20071399 |
T |
|
| Q |
129 |
ttctccaaagcttgatggttctaattaccttgcttggagtcgatctatgaaacgcgcattgggaaggaagaacaaattagggttcatcaatg |
220 |
Q |
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|| ||| ||| | ||||||||||||||| ||||||| |||||||||| ||| || ||||||| |||||||||| |||||||||||||| |
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| T |
20071400 |
ttatcctaagttcagtggttctaattacctcgcttggaatcgatctatgcaacatgccttgggaacaaagaacaaataagggttcatcaatg |
20071491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 220
Target Start/End: Complemental strand, 28668945 - 28668754
Alignment:
| Q |
37 |
atgcctccaagagttgttcctgctcatcttcaacaa---------gataatgattctgcgttcttcatacaccctagcgaaggtcctaattctctaattg |
127 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||| |||||||||||| | || ||| | ||||| |||||||||||||||| ||||| | |
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| T |
28668945 |
atgcctccacgagctgttcctgctcatcttcaacaaccgaatcaagataatgattcttcttt-ttcgtgcacccaagcgaaggtcctaattttctaaccg |
28668847 |
T |
|
| Q |
128 |
tttctccaaagcttgatggttctaattaccttgcttggagtcgatctatgaaacgcgcattgggaaggaagaacaaattagggttcatcaatg |
220 |
Q |
| |
|
|||||| |||||| ||||||| |||||| |||||||| ||||||||| ||| || ||||||| ||| ||||| |||| |||||||||| |
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|
| T |
28668846 |
tttctctgaagcttaatggttccaattacattgcttggtaccgatctatgcaacaagctttgggaacaaaggacaaactaggtttcatcaatg |
28668754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 21521350 - 21521288
Alignment:
| Q |
158 |
ttgcttggagtcgatctatgaaacgcgcattgggaaggaagaacaaattagggttcatcaatg |
220 |
Q |
| |
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||||||||| || | ||||| ||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
21521350 |
ttgcttggaatcaaactatgcaacgcgcattgggaacaacaaacaaattagggttcatcaatg |
21521288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 22641519 - 22641563
Alignment:
| Q |
31 |
ttcatcatgcctccaagagttgttcctgctcatcttcaacaagat |
75 |
Q |
| |
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||||||||||||||||||||| |||| || ||| ||||||||||| |
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|
| T |
22641519 |
ttcatcatgcctccaagagttattccagcacatattcaacaagat |
22641563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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