View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18228_high_11 (Length: 453)
Name: NF18228_high_11
Description: NF18228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18228_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Original strand, 35351359 - 35351785
Alignment:
| Q |
11 |
caaagggtgaggaggtataaaagtgatgagagagaaaggtagtgtgagaaaatcagatttgtaaattcaattatttgcttaaattgaatatcagaagtga |
110 |
Q |
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| T |
35351359 |
caaagggtgaggaggtataaaagtgatgagagagaaaggtagtgtgagaaaatcagatttgtaaattcaattatttgcttaaattgaatatcagaagtga |
35351458 |
T |
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| Q |
111 |
tgtttaaggaaaaactttttatttttatataggatgtgactatttcagcaaaaccaaatagcaacatattattcttagtggcatagttatcattgtacat |
210 |
Q |
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| T |
35351459 |
tgtttaaggaaaaactttttatttttatataggatgtgactatttcagcaaaaccaaatagcaacatattattcttagtggcatagttatcattgtgcat |
35351558 |
T |
|
| Q |
211 |
gtgcatattattttacatgcatctcatcacattcacacatcgtagaaaaaatggttatctgctctgcatgttgacctttgttttttcatatcttttcctt |
310 |
Q |
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| T |
35351559 |
gtgcatattattttacatgcatctcatcacattcacacatcgtagaaaaaatggttatctgctctgcatgctgacctttgttttttcatatcttttcctt |
35351658 |
T |
|
| Q |
311 |
gacaatacaatttttaaacttacgtaggagaaagaagcacataaaaatggagaaacacaatctttggaggatacctctgagcaaagtaaccctccacctg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351659 |
gacaatacaatttttaaacttacgtaggagaaagaagcacataaaaatggagaaacacaatctttggaggatacctctgagcaaagtaaccctccacctg |
35351758 |
T |
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| Q |
411 |
tagatgcaggacagctaaacaagtttg |
437 |
Q |
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| T |
35351759 |
tagatgcaggacagctaaacaagtttg |
35351785 |
T |
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