View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18228_high_18 (Length: 234)
Name: NF18228_high_18
Description: NF18228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18228_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 13991920 - 13991718
Alignment:
| Q |
15 |
aaatacacctctgaaaaattgcaaggaagccgataaaagatacacctccttgttggaagcaaatcaatgtagaagggacccaaaataacacaacgatgca |
114 |
Q |
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| T |
13991920 |
aaatacagctctgaaaaattgcaaggaagccgataaaagatacacttccg-gttggaagcaaatcaatgtagaagggacccaaaataacacaacgatgca |
13991822 |
T |
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| Q |
115 |
gccataaaaattgtagccaatccacggtcaagaaaggtgtgataatacaacttttccatggatcttcttgtatatcaacgaatgtgagacagttttatca |
214 |
Q |
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| T |
13991821 |
gccataaaaattgttgccaatccacggtcaagaaag--gtgataatacaacttttccatggatcttcttgtatatcaacgaatgtgagacagttttatca |
13991724 |
T |
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| Q |
215 |
tgaaac |
220 |
Q |
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|||||| |
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| T |
13991723 |
tgaaac |
13991718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 13975888 - 13975683
Alignment:
| Q |
15 |
aaatacacctctgaaaaattgcaaggaagccgataaaagatacacctccttgttggaagcaaatcaatgtagaagggacccaaaataacacaacgatgca |
114 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
13975888 |
aaatacagctccgaaaaattgcaaggaagccgataaaagatacacctccttgctggaagcaaatcaatgtagaagggacccaaaacaacacatcgatgca |
13975789 |
T |
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| Q |
115 |
gccataaaaattgtagccaatccacggtcaagaaaggtgtgataatacaacttttccatggatcttcttgtatatcaacgaatgtgagacagttttatca |
214 |
Q |
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|||||||| ||||| |||||||| ||||||||| | ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13975788 |
gccataaatattgttgccaatccgcggtcaagagaaagctgatactacaacttttccatggatcttcttgtatatcaactaatgtgagacagttttatca |
13975689 |
T |
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| Q |
215 |
tgaaac |
220 |
Q |
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||||| |
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| T |
13975688 |
agaaac |
13975683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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