View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18228_high_19 (Length: 222)
Name: NF18228_high_19
Description: NF18228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18228_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 1489893 - 1490081
Alignment:
| Q |
15 |
cacagaacataaatgataagttaatccaaaataaaagtgaatcaaaatccttatttgatagataatagtatcttctcatagatgagaaaaagaaaaacca |
114 |
Q |
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| T |
1489893 |
cacaaaacataaatgataagttaatccaaaataaaagagaatcaaaatccttatttgatatataatagtatcttctcgtggatgagaaaaagaaaaacca |
1489992 |
T |
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| Q |
115 |
ataaagtggataaggtgtttgagtccatcttcgtcattattaaagattttgtagtgataaaaaacattgaaaaaattcttgaagattgt |
203 |
Q |
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| T |
1489993 |
ataaagtggataaggtgtttgagtccatcttcgtcattattaaagattttgtagtgataaaaaacattgaaaaaattcttgaagattgt |
1490081 |
T |
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