View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18228_high_20 (Length: 214)
Name: NF18228_high_20
Description: NF18228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18228_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 8517450 - 8517629
Alignment:
| Q |
18 |
aactcaatggaaccaagaaagagtcaaaggtagaactttttgatcataactataacatgtcacaaattatggcttgatgcctttattcttgtatacagag |
117 |
Q |
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| T |
8517450 |
aactcaatggaaccaagaaagagtcaaaggtagaactttttgatcataactataacatgtcacaaattatggcttgatgcctttattcttgtatacagag |
8517549 |
T |
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| Q |
118 |
tttacaatgtattataaataattacatttaaggtgaacaaatataataaactaataaacagagcaaatcaacttcttatt |
197 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8517550 |
gttacaaggtattataaataattacatttaaggtgaacaaatataataaactaataaacagagcaaatcaacttcttatt |
8517629 |
T |
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