View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18228_high_3 (Length: 709)
Name: NF18228_high_3
Description: NF18228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18228_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 20757000 - 20757277
Alignment:
| Q |
1 |
acttaattacaatttgaaaccattgtgtttacctgtagttgcacttttagtgaggaagccatggaatccacatattgttgtggagtgtttttcttttgaa |
100 |
Q |
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| T |
20757000 |
acttaattacaatttgaaaccattgtgtttacctgtagttgcacttttagtgaggaagccatggaatccacatattgttgtggagtgtttttcttttgaa |
20757099 |
T |
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| Q |
101 |
gatcctttgaattaaagtaaccaaatatatcattgcttccaatcacaacagcaaatatggattttgagaggtgtttctgaagtatatatgcttctgtttg |
200 |
Q |
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| T |
20757100 |
gatcctttgaattaaagtaaccaaatatatcattgcttccaatcacaacagcaaatatggattttgagagatgattctgaagtatagatgcttctgtttg |
20757199 |
T |
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| Q |
201 |
ctgtgtcaatttttcatgcacttgtgaataatagtccacttgctttgtcaaaggtattgattgtctctgcaagaaatg |
278 |
Q |
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| T |
20757200 |
ttgtgtcaatttttcatgcatttgtgaataatagtccacttgctttgtcaaaggtattgattgtctctgcaagaaatg |
20757277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 411 - 690
Target Start/End: Original strand, 20757800 - 20758079
Alignment:
| Q |
411 |
tttagtcaagagattaacattgatggatcaagattggaacgattgacgtaagtcatctgatctttgatttaacagtgccaatttcttgactatatataat |
510 |
Q |
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| T |
20757800 |
tttagtcaagagattgacattgatggatcaagattggaacaattgacgtaagtcatctgatctttgatctaacagtgccaatttcttgactatatataat |
20757899 |
T |
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| Q |
511 |
ccaaatcttcactttagttcgtctttaatcgtagtataaaattcctttttggacaacaaatttattgtacaaaatgtaaaaacagaaatggtgaaggaaa |
610 |
Q |
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| T |
20757900 |
ccaaatcttcactttagttcgtctttaatcgtagtacaaaattcatttttggacaacaaacttattgtgcaaaatgtaaaaacagaaatggtgaaggaaa |
20757999 |
T |
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| Q |
611 |
agaaagaattagaactacacttacaaaattttcatctgagccattaaatattccagcacctccagatgcaaagttaacac |
690 |
Q |
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| T |
20758000 |
agaaagaattagaattacacttacaaaattttcatctgtgccattgaatataccagcacccccagatgcaaagttaacac |
20758079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 28 - 278
Target Start/End: Original strand, 20752431 - 20752681
Alignment:
| Q |
28 |
tttacctgtagttgcacttttagtgaggaagccatggaatccacatattgttgtggagtgtttttcttttgaagatcctttgaattaaagtaaccaaata |
127 |
Q |
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| T |
20752431 |
tttacctgtaattgtatttttagtgaggaagtcatggaatccacatattgttgtggagtatttttcttttgaagatccattgagttatagtaaccaaata |
20752530 |
T |
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| Q |
128 |
tatcattgcttccaatcacaacagcaaatatggattttgagaggtgtttctgaagtatatatgcttctgtttgctgtgtcaatttttcatgcacttgtga |
227 |
Q |
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| T |
20752531 |
tatcattgcttccaatcactatagcaaatatggattttgagaggtgtttctgaagtgtagatgcttctgtttgttgtgtcaatttttcatgcacttgtga |
20752630 |
T |
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| Q |
228 |
ataatagtccacttgctttgtcaaaggtattgattgtctctgcaagaaatg |
278 |
Q |
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| T |
20752631 |
ataatagtccacttgctttgtcaaagatattgactgtctctgcaagaaatg |
20752681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 20800293 - 20800535
Alignment:
| Q |
19 |
accattgtgtttacctgtagttgcacttttagtgaggaagccatggaatccacatattgttgtggagtgtttttcttttgaagatcctttgaattaaagt |
118 |
Q |
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| T |
20800293 |
accattgtgcttacctgtagttgcacttttagtgaagaagccatggatttgacaaactgttgtggggtgtttttcttttgaagatcctttgaattgaagt |
20800392 |
T |
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| Q |
119 |
aaccaaatatatcattgcttccaatcacaacagcaaatatggattttgagaggtgtttctgaagtatatatgcttctgtttgctgtgtcaatttttcatg |
218 |
Q |
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|| |||| ||||||||| | |||||||||||| || ||||||| ||||||||||||||||||| | || ||||| |||| | |||| ||| ||||| |
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| T |
20800393 |
aatcaaagatatcattgttgccaatcacaacaaagaagatggattctgagaggtgtttctgaagtgttgatacttctatttgttttgtcgattcttcata |
20800492 |
T |
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| Q |
219 |
cacttgtgaataatagtccacttgctttgtcaaaggtattgat |
261 |
Q |
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| T |
20800493 |
catttgtgaatagtagtccacttgctctgttaaatgtattgat |
20800535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 607 - 690
Target Start/End: Original strand, 20801281 - 20801364
Alignment:
| Q |
607 |
gaaaagaaagaattagaactacacttacaaaattttcatctgagccattaaatattccagcacctccagatgcaaagttaacac |
690 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||| |||| ||| ||||||||||||||||| ||||| ||||||||||||| |
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| T |
20801281 |
gaaaagaaagaattagaactgcacttacataatttggatctatgcctttaaatattccagcaccaccagaggcaaagttaacac |
20801364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 608 - 690
Target Start/End: Original strand, 20752759 - 20752840
Alignment:
| Q |
608 |
aaaagaaagaattagaactacacttacaaaattttcatctgagccattaaatattccagcacctccagatgcaaagttaacac |
690 |
Q |
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| T |
20752759 |
aaaagaaa-aataagaactgcacttacaatagttggatctgtgccattaaatattccagcacctccagatgcaaagttaacac |
20752840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 29 - 179
Target Start/End: Complemental strand, 40640616 - 40640466
Alignment:
| Q |
29 |
ttacctgtagttgcacttttagtgaggaagccatggaatccacatattgttgtggagtgtttttcttttgaagatcctttgaattaaagtaaccaaatat |
128 |
Q |
| |
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||||||||||||||| ||| |||||| || ||||||||| ||||| |||||||| || |||||||| |||| || ||| | ||| || ||||| | |
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| T |
40640616 |
ttacctgtagttgcagtttgagtgagaaaagcatggaatcaacatactgttgtggggtatttttcttacgaagttctgatgactcaaaatatccaaagag |
40640517 |
T |
|
| Q |
129 |
atcattgcttccaatcacaacagcaaatatggattttgagaggtgtttctg |
179 |
Q |
| |
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||||||| ||||||||||||||||||| || ||||||||||| |||||||| |
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| T |
40640516 |
atcattgtttccaatcacaacagcaaaaattgattttgagagatgtttctg |
40640466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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