View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18228_high_4 (Length: 581)

Name: NF18228_high_4
Description: NF18228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18228_high_4
NF18228_high_4
[»] chr5 (20 HSPs)
chr5 (6-281)||(3299690-3299965)
chr5 (6-281)||(3392583-3392858)
chr5 (6-281)||(1163360-1163638)
chr5 (370-480)||(1163145-1163252)
chr5 (32-213)||(1850127-1850293)
chr5 (485-564)||(1163030-1163109)
chr5 (1-83)||(39169016-39169101)
chr5 (382-462)||(40418870-40418950)
chr5 (32-264)||(40418478-40418710)
chr5 (486-562)||(40418993-40419069)
chr5 (168-264)||(38988036-38988132)
chr5 (6-249)||(39879989-39880232)
chr5 (168-263)||(39726755-39726854)
chr5 (6-95)||(38987874-38987963)
chr5 (6-95)||(39726593-39726682)
chr5 (339-371)||(1163270-1163302)
chr5 (382-426)||(38988292-38988336)
chr5 (394-462)||(39880427-39880495)
chr5 (405-462)||(3300086-3300147)
chr5 (405-462)||(3392979-3393040)
[»] chr4 (5 HSPs)
chr4 (486-562)||(25911553-25911629)
chr4 (164-272)||(44444435-44444543)
chr4 (168-263)||(25911951-25912046)
chr4 (382-462)||(25911695-25911775)
chr4 (1-88)||(25912122-25912209)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 6 - 281
Target Start/End: Original strand, 3299690 - 3299965
Alignment:
Q  6 aatggtagaattgttgttggtgagggtaagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaactcctcttcgaccgaagag 105  Q
    ||||||||| |||||| || | ||| ||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  3299690 aatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagag 3299789  T
Q  106 caatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299790 caatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatg 3299889  T
Q  206 atccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299890 atccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc 3299965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 6 - 281
Target Start/End: Original strand, 3392583 - 3392858
Alignment:
Q  6 aatggtagaattgttgttggtgagggtaagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaactcctcttcgaccgaagag 105  Q
    ||||||||| |||||| || | ||| ||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  3392583 aatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagag 3392682  T
Q  106 caatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392683 caatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatg 3392782  T
Q  206 atccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392783 atccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc 3392858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 6 - 281
Target Start/End: Complemental strand, 1163638 - 1163360
Alignment:
Q  6 aatggtagaattgttgttggtgagggtaagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaactcctcttcgaccgaagag 105  Q
    ||||||||| |||||  || | ||| ||||||||||||||  |||||||||||  |||||||||||||||||||| |||||||||||||||||| |||||    
T  1163638 aatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaagatctacaacaagaccctaaactcctcttcgaccaaagag 1163539  T
Q  106 caatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatg---g 202  Q
    ||||||||||||||| |||| |||||||||||| || | ||  | ||| ||||||||||   |||||||||| |||||||||||||||||||||||   |    
T  1163538 caatctaccgaaatccaacctactgccatccatctggcccactcttcagatcccccttttatagacctttttttccattggaggatttgcttgatggatg 1163439  T
Q  203 atgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc 281  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1163438 atgatctacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacaaaaacaaggaagatgc 1163360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 1163252 - 1163145
Alignment:
Q  370 tttatgtttatcagaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgtcattatatttggcatataaagttcctttcaccatttactactt 469  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||   |||||    
T  1163252 tttatgtttattagaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtcattatattcggcatataaagttcctttcaccatt---tactt 1163156  T
Q  470 tcctgtcttcc 480  Q
    |||||||||||    
T  1163155 tcctgtcttcc 1163145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 1850127 - 1850293
Alignment:
Q  32 taagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgc 131  Q
    ||||||||||||||| |||||||||||  |||||||| ||||||||||| |||||||||||||||||||||               ||| ||||||||||    
T  1850127 taagtgggaatctgattatcaactcttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaa---------------atccaaccaactgc 1850211  T
Q  132 catccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccactt 213  Q
    ||||||| || | || |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1850212 catccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggatgatctactt 1850293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 485 - 564
Target Start/End: Complemental strand, 1163109 - 1163030
Alignment:
Q  485 gtaagcagctaatatgcattggtttgatcttctctgctatgtatatatctgtttcgtaaatcttaaacagttgtttgttt 564  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  1163109 gtaagcagctaatatgcattggtttgatcttctctgctatgtaaatatctgtttcgtaaattttaaacagttgtttgttt 1163030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 39169016 - 39169101
Alignment:
Q  1 aagaaaatggtagaattgttgttggtg---agggtaagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacact 83  Q
    |||||||||||||||||||||||| ||   ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  39169016 aagaaaatggtagaattgttgttgttgttgagggtaagtgggaatctgattatcaactctttttaaaagatctacaacaagacact 39169101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 382 - 462
Target Start/End: Original strand, 40418870 - 40418950
Alignment:
Q  382 agaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgtcattatatttggcatataaagttcctttcaccattt 462  Q
    ||||||||||| ||||||| ||||||||||  |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  40418870 agaacaagttacgtgtgttgatcgtgcttcacaaaccatgcctgtcattatattcggcataaaaagttcctttcaccattt 40418950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 32 - 264
Target Start/End: Original strand, 40418478 - 40418710
Alignment:
Q  32 taagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgc 131  Q
    ||||||||||||||| |||||||||||  | || |||||||||||||||||||||||||||||| ||  |||||||  ||||||| ||| ||||||  ||    
T  40418478 taagtgggaatctgattatcaactcttcttcaatgatctacaacaagacactaaactcctcttcaacgtaagagcagcctaccgagatcaaaccaaaagc 40418577  T
Q  132 catccatttgacacaaccatc-aaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaaca 230  Q
     |  ||| |||     || ||  ||||||||  ||  |||||||||  |||||||||||| |||||||| |||||||| | |||| |||||||||||| |    
T  40418578 tacacatatgatgggcccttcgtaatccccc-ctaccagaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaa 40418676  T
Q  231 tcacttctattgatgttttgttacttccaataac 264  Q
    |||||| | || ||||||||||  ||||||||||    
T  40418677 tcacttttgttaatgttttgtttgttccaataac 40418710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 486 - 562
Target Start/End: Original strand, 40418993 - 40419069
Alignment:
Q  486 taagcagctaatatgcattggtttgatcttctctgctatgtatatatctgtttcgtaaatcttaaacagttgtttgt 562  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||||| ||||||| |||||    
T  40418993 taagcagctaatatgcattggttcgatcttctctgctacgtaaatatctgtttcataaatctttaacagttatttgt 40419069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 38988036 - 38988132
Alignment:
Q  168 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataac 264  Q
    ||||||||| ||||||||||||| |||||||| |||||||| | | || |||||||||||| ||||||| | |||||||||||||  ||||||||||    
T  38988036 agaccttttgatccattggaggacttgcttgacggatgatctagtcactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataac 38988132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 39879989 - 39880232
Alignment:
Q  6 aatggtagaattgttgttggtgagggtaagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaactcctcttcgaccgaagag 105  Q
    ||||||||| |||||| ||   ||| ||||||||||||||| |||||||||||  | || |||||||||||| ||||||||||| |||||  |  |||||    
T  39879989 aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaaaacactaaactcatcttcagcgtaagag 39880088  T
Q  106 caatctaccgaaatcgaaccaactgccatccatttgacacaaccatca-aatccccctttagaagacctttttatccattggaggatttgcttgatggat 204  Q
    ||  ||||||| ||| ||||||  || |  ||| |||     || ||| |||||||| | |  |||||||||| |||||||||||| |||||||| ||||    
T  39880089 cagcctaccgagatcaaaccaaaagctacacatatgatgggcccttcagaatcccccct-accagacctttttttccattggaggacttgcttgacggat 39880187  T
Q  205 gatccacttacaagcttaaacaaacatcacttctattgatgtttt 249  Q
    |||| | |||| |||||||||||| ||||||| | ||||||||||    
T  39880188 gatctagttactagcttaaacaaaaatcacttttgttgatgtttt 39880232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 39726755 - 39726854
Alignment:
Q  168 agacctttttatccattggaggatttgcttgatggatgat----ccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 263  Q
    ||||||||| ||||||||||||| |||||||| |||||||    | | |||| |||||||||||| ||||| | | |||||||||||||  |||||||||    
T  39726755 agaccttttgatccattggaggacttgcttgacggatgatctagctagttactagcttaaacaaaaatcacctttgttgatgttttgtttgttccaataa 39726854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 38987874 - 38987963
Alignment:
Q  6 aatggtagaattgttgttggtgagggtaagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaactcctcttc 95  Q
    ||||||||| |||||| ||   ||| ||||||||||||||| |||||||||||  | || ||||||||||||||| || |||| ||||||    
T  38987874 aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagaccctcaactactcttc 38987963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 39726593 - 39726682
Alignment:
Q  6 aatggtagaattgttgttggtgagggtaagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaactcctcttc 95  Q
    ||||||||| |||||| ||   ||| ||||||||||||||| |||||||||||  | || ||||||||||||||| || |||| ||||||    
T  39726593 aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagaccctcaactactcttc 39726682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 371
Target Start/End: Complemental strand, 1163302 - 1163270
Alignment:
Q  339 cgataacaagaacaacttactttgttgcaattt 371  Q
    |||||||||||||||||||||||||||||||||    
T  1163302 cgataacaagaacaacttactttgttgcaattt 1163270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 38988292 - 38988336
Alignment:
Q  382 agaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgt 426  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||||    
T  38988292 agaacaagttatgtgtgttgatcttgcttcccaaaccatgcctgt 38988336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 462
Target Start/End: Original strand, 39880427 - 39880495
Alignment:
Q  394 gtgtgtttatcgtgcttccgaaaccatgcctgtcattatatttggcatataaagttcctttcaccattt 462  Q
    ||||||| ||| ||||||| ||| |||| |||||| |||||| |||||| |||||| ||||||||||||    
T  39880427 gtgtgttgatcttgcttcccaaaacatgtctgtcaatatattcggcataaaaagttactttcaccattt 39880495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 462
Target Start/End: Original strand, 3300086 - 3300147
Alignment:
Q  405 gtgcttccgaaaccatgcctgtcatta----tatttggcatataaagttcctttcaccattt 462  Q
    |||||||| ||||||||| ||||||||    |||| |||||||||||| |||||||||||||    
T  3300086 gtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcaccattt 3300147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 462
Target Start/End: Original strand, 3392979 - 3393040
Alignment:
Q  405 gtgcttccgaaaccatgcctgtcatta----tatttggcatataaagttcctttcaccattt 462  Q
    |||||||| ||||||||| ||||||||    |||| |||||||||||| |||||||||||||    
T  3392979 gtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcaccattt 3393040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 486 - 562
Target Start/End: Complemental strand, 25911629 - 25911553
Alignment:
Q  486 taagcagctaatatgcattggtttgatcttctctgctatgtatatatctgtttcgtaaatcttaaacagttgtttgt 562  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||    
T  25911629 taagcagctaatatacattggtttgatcttctctgctatgtaaatatctgtttcataaatctttaacagttgtttgt 25911553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 164 - 272
Target Start/End: Complemental strand, 44444543 - 44444435
Alignment:
Q  164 tagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 263  Q
    ||||||| |||||  |||||| ||||| |||||||| |||||||| | ||||||||||||||||| ||||||| | |||||||||||||   ||||||||    
T  44444543 tagaagatcttttgttccattagaggacttgcttgacggatgatctagttacaagcttaaacaaaaatcacttttgttgatgttttgtttactccaataa 44444444  T
Q  264 ccaaaacaa 272  Q
    | |||||||    
T  44444443 cgaaaacaa 44444435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 25912046 - 25911951
Alignment:
Q  168 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 263  Q
    |||||||||  |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | |||||||||||||  |||||||||    
T  25912046 agaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataa 25911951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 382 - 462
Target Start/End: Complemental strand, 25911775 - 25911695
Alignment:
Q  382 agaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgtcattatatttggcatataaagttcctttcaccattt 462  Q
    ||||||||||| ||||||| ||| ||||||| |||||||| ||||||||||||| |||||| ||| |||||||||| ||||    
T  25911775 agaacaagttacgtgtgttgatcatgcttcccaaaccatgtctgtcattatattcggcataaaaaattcctttcactattt 25911695  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 25912209 - 25912122
Alignment:
Q  1 aagaaaatggtagaattgttgttggtgagggtaagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaact 88  Q
    |||| ||||||||| |||||| || | ||| ||||||||||||||| |||||||||||  ||||  ||||||| |||||| |||||||    
T  25912209 aagagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaattatctacagcaagaccctaaact 25912122  T

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