View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18228_low_10 (Length: 518)
Name: NF18228_low_10
Description: NF18228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18228_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 29673120 - 29672951
Alignment:
| Q |
15 |
catcaacggcttcatcaaacacatggattaacaccaaacttggttcatcatcttcatactcttctcctttcaaagattcaagatcaaattcaatcacttt |
114 |
Q |
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| T |
29673120 |
catcaacggcttcatcaaacacatggattaacaccaaacttggttcatcatcttcatactcttctcctttcaaagattcaagatcaaattcaatcacttt |
29673021 |
T |
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| Q |
115 |
aaagaagaaaagatctatctcccaaaacaacaaaatctcatgctcacttcaaacaacactaccttttcct |
184 |
Q |
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| T |
29673020 |
aaagaagaaaagatctatctcccaaaacaacaaaatctcatgctcacttcaaacaacactaccttttcct |
29672951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 320 - 502
Target Start/End: Complemental strand, 29672815 - 29672633
Alignment:
| Q |
320 |
gccgccaccgcccttgacttcgtcgaaacaaccttaatcaaacaagaacagaaacacccactaccaaaaacctccgacccacgtgtccaaattgccggta |
419 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
29672815 |
gccgccaccgccctcgacttcgtcgaaacaaccttaatcaaacaagaacaaaaacacccactacccaaaacctccgacccacgtgttcaaattgccggta |
29672716 |
T |
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| Q |
420 |
acttcgccccagtaccggaacacccggtaacccaatctcttccaattaccggcaaaatcccaaccaacattgacggtgtttac |
502 |
Q |
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| T |
29672715 |
acttcgccccagtaccggaacacccggtaacccaatctcttccaattaccggcaaaatcccaaccaacattgacggtgtttac |
29672633 |
T |
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