View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18228_low_15 (Length: 382)
Name: NF18228_low_15
Description: NF18228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18228_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 39410558 - 39410198
Alignment:
| Q |
17 |
aagacaaagacaacatgcatatataagcaaagagatgaagttaaaaacaagagcacaaaccttaaggcctctctcaatgattttgacagcatatagttta |
116 |
Q |
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| T |
39410558 |
aagacaaagacaacatgcatatataagcaaagagatgaagttaaaaacaagagcacaaaccttaaggcctctctcaatgattttgacagcatatagttta |
39410459 |
T |
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| Q |
117 |
ccactttgtctctcccttacaagctttgctaccccaaaatttcctgacccaatacctttaataatctcataacgttcttccattctcgtgacgtagtaca |
216 |
Q |
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| T |
39410458 |
ccactttgtctctcccttacaagctttgctaccccaaaatttcctgacccaatacctttaataatctcataacgttcttccattctcgtgacgtagtaca |
39410359 |
T |
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| Q |
217 |
attaatattacacaatttacaacagccaagtgttgttttttgaagaatatatgaactaccaagtagcaaattgaaaaatcttctctc-nnnnnnnnatga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
39410358 |
attaatattacacaatttacaacagccaagtgttgttttttgaagaatatatgaactaccaagtagcaaattgaaaaatattctctctttttttttatga |
39410259 |
T |
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| Q |
316 |
cctcaaattttcaattggaaaattaaagttaaagatggctggttttgctgacatttatatc |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39410258 |
cctcaaattttcaattggaaaattaaagttaaagatggctggttttgctgacatttatatc |
39410198 |
T |
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