View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18228_low_17 (Length: 369)

Name: NF18228_low_17
Description: NF18228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18228_low_17
NF18228_low_17
[»] chr6 (29 HSPs)
chr6 (1-369)||(5100497-5100865)
chr6 (1-369)||(5135598-5135966)
chr6 (154-358)||(5351659-5351855)
chr6 (200-314)||(5398379-5398493)
chr6 (225-300)||(5255975-5256050)
chr6 (1-121)||(5242130-5242249)
chr6 (211-315)||(5242327-5242429)
chr6 (1-129)||(5351846-5351972)
chr6 (234-309)||(5439361-5439436)
chr6 (225-315)||(5180635-5180725)
chr6 (234-314)||(5352700-5352780)
chr6 (216-294)||(5334453-5334532)
chr6 (4-116)||(5398520-5398627)
chr6 (225-303)||(5448965-5449043)
chr6 (225-278)||(5283100-5283153)
chr6 (55-129)||(5334567-5334640)
chr6 (52-116)||(5687599-5687661)
chr6 (321-369)||(5098459-5098507)
chr6 (227-315)||(5155843-5155931)
chr6 (316-369)||(5242506-5242559)
chr6 (316-361)||(5156007-5156052)
chr6 (316-369)||(5177987-5178040)
chr6 (316-369)||(5279812-5279865)
chr6 (321-366)||(5283223-5283268)
chr6 (316-361)||(5372353-5372398)
chr6 (316-369)||(5427148-5427201)
chr6 (316-369)||(5688897-5688950)
chr6 (316-368)||(5126623-5126675)
chr6 (321-369)||(5180773-5180821)
[»] chr3 (4 HSPs)
chr3 (227-302)||(47985223-47985298)
chr3 (227-302)||(47994510-47994585)
chr3 (227-302)||(48003797-48003872)
chr3 (227-302)||(48013082-48013157)
[»] scaffold1476 (1 HSPs)
scaffold1476 (192-257)||(163-228)
[»] chr2 (1 HSPs)
chr2 (192-261)||(22583209-22583280)
[»] chr4 (2 HSPs)
chr4 (316-367)||(4132612-4132663)
chr4 (316-367)||(4319296-4319347)
[»] scaffold0294 (1 HSPs)
scaffold0294 (261-313)||(7741-7793)


Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 5100497 - 5100865
Alignment:
Q  1 tttgttaaaagacatttaaatggtatataacatggaagaattataacagaacaaattagagtctttcagaacgctttgtgaatacaaaaattcaccaagg 100  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  5100497 tttgttaaaagacatttaaatggtatatgacatggaagaattgtaacagaacaaattagaatctttcagaactctttgtgaatacaaaaattcaccaagg 5100596  T
Q  101 ataaaatctagaaactacagaccaaaaatcagacaatgacagagcagcctgtaagccaaaaatggaaaacaattgttagcagtcatcataaaattgattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5100597 ataaaatctagaaactacagaccaaaaatcagacaatgacaaagcagcttgtaagccaaaaatggaaaacaattgttagcagtcatcataaaattgattt 5100696  T
Q  201 ttgctcggccattgctttactatctttcattgattcattccactcggtgtttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtaga 300  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5100697 ttgctcggccattgcattactatctttcattgattcattccactcggtttttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtaga 5100796  T
Q  301 gaatctcttgacagatggtccatcgtatacgagataaactgctgtctttttcacaatgaaactgttctc 369  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5100797 gaatctcttgacagatggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctc 5100865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 5135598 - 5135966
Alignment:
Q  1 tttgttaaaagacatttaaatggtatataacatggaagaattataacagaacaaattagagtctttcagaacgctttgtgaatacaaaaattcaccaagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||     
T  5135598 tttgttaaaagacatttaaatggtatataacatggaagaattgtaacagaacaaattagaatctttcagaactctttttgaatacaaaaattcaccaaga 5135697  T
Q  101 ataaaatctagaaactacagaccaaaaatcagacaatgacagagcagcctgtaagccaaaaatggaaaacaattgttagcagtcatcataaaattgattt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5135698 ataaaatctagaaactacagaccaaaaatcagacaatgacagagcagcttgtaagccaaaaatggaaaacaattgttagcagtcatcataaaattgattt 5135797  T
Q  201 ttgctcggccattgctttactatctttcattgattcattccactcggtgtttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtaga 300  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5135798 ttgctcggccattgctttactatcttccattgattcattccactcggtttttcttctttctgttctgattgaagtcatcattgggctcctcttcagtaga 5135897  T
Q  301 gaatctcttgacagatggtccatcgtatacgagataaactgctgtctttttcacaatgaaactgttctc 369  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5135898 gaatctcttgacagatggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctc 5135966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 154 - 358
Target Start/End: Complemental strand, 5351855 - 5351659
Alignment:
Q  154 agccaaaaatggaaaacaattgttagcagtcatcataaaattgatttttgctcggccattgctttactatctttcattgattcattccactcggtgtttc 253  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||| |        |||||| || ||||    
T  5351855 agccaaaaatggaaaacaattgttagccgtcaccataaaattgatttttgctccgccattgctttactatctttcaat--------ccactcagtttttc 5351764  T
Q  254 ttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaatctcttgacagatggtccatcgtatacgagataaactgctgtctttttca 353  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  5351763 ttctttctgttctgattaaggtcatcagtgggctcctcttcagtagagaatctcttgacagatggttcatcatatacgagataaactactgtctttttca 5351664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 200 - 314
Target Start/End: Complemental strand, 5398493 - 5398379
Alignment:
Q  200 tttgctcggccattgctttactatctttcattgattcattccactcggtgtttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtag 299  Q
    ||||||| | ||||| ||||| ||||||||||||||||||| ||||||  |||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  5398493 tttgctcaggcattgttttaccatctttcattgattcattcaactcggcttttcttctttcttttctgattgaagtcatcagtgggctcatcttcagtag 5398394  T
Q  300 agaatctcttgacag 314  Q
    |||||||||||||||    
T  5398393 agaatctcttgacag 5398379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 225 - 300
Target Start/End: Original strand, 5255975 - 5256050
Alignment:
Q  225 tttcattgattcattccactcggtgtttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtaga 300  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5255975 tttcattgattcattccactcggtttttcttctttctgttctgattgaaatcatcagtgggctcctcttcagtaga 5256050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 5242130 - 5242249
Alignment:
Q  1 tttgttaaaagacatttaaatggtatataacatggaagaattataacagaacaaattagagtctttcagaacgctttgtgaatacaaaaattcaccaagg 100  Q
    ||||||||||||||||||||||||| || ||||| ||||||||||||| |||||||||||  ||||||  || || ||| |||| |||||||||||| ||    
T  5242130 tttgttaaaagacatttaaatggtacatgacatgaaagaattataacataacaaattagaaactttcaccactctctgtcaata-aaaaattcaccatgg 5242228  T
Q  101 ataaaatctagaaactacaga 121  Q
    |||||||||||||||||||||    
T  5242229 ataaaatctagaaactacaga 5242249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 211 - 315
Target Start/End: Original strand, 5242327 - 5242429
Alignment:
Q  211 attgctttactatctttcattgattcattccactcggtgtttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaatctcttg 310  Q
    |||| ||||| ||||||||||||| ||||||||||| | ||||||  ||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  5242327 attgttttaccatctttcattgatacattccactcgatttttctt--ttccgttctgattgaagtcatcagcaggctcctcttcagtagagaatctcttg 5242424  T
Q  311 acaga 315  Q
    |||||    
T  5242425 acaga 5242429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 5351972 - 5351846
Alignment:
Q  1 tttgttaaaagacatttaaatggtatataacatggaagaattataacagaacaaattagagtctttcagaacgctttgtgaatacaaaaattcaccaagg 100  Q
    ||||||||||||| ||||||| ||| || |||||||| |||| ||||||||||||||||| |||||||  || ||||||||||| ||||||||| || ||    
T  5351972 tttgttaaaagacttttaaatagtacatgacatggaacaattgtaacagaacaaattagaatctttcaccactctttgtgaata-aaaaattcaacatgg 5351874  T
Q  101 ataaaatctagaaactacagaccaaaaat 129  Q
    |||||||| ||||||||||| ||||||||    
T  5351873 ataaaatcaagaaactacag-ccaaaaat 5351846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 309
Target Start/End: Complemental strand, 5439436 - 5439361
Alignment:
Q  234 ttcattccactcggtgtttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaatctctt 309  Q
    ||||||||| ||| | |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  5439436 ttcattccattcgatttttcttctttctgttccgattgaagtcatcagtgggctcctctccagtagagaatctctt 5439361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 225 - 315
Target Start/End: Original strand, 5180635 - 5180725
Alignment:
Q  225 tttcattgattcattccactcggtgtttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaatctcttgacaga 315  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| || | | | || ||||||| |||||||||||| |||||    
T  5180635 tttcattgattcattccactcggtttttcttctttctgttctgattgaagtcgtcggcgtgttcgtcttcagcagagaatctcttcacaga 5180725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 5352700 - 5352780
Alignment:
Q  234 ttcattccactcggtgtttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaatctcttgacag 314  Q
    ||||||||| ||| | |||||||||||||||||||||||  || |||||| ||||||||||| ||||||||||||||||||    
T  5352700 ttcattccattcgatttttcttctttctgttctgattgacatcttcagtgtgctcctcttcaatagagaatctcttgacag 5352780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 5334532 - 5334453
Alignment:
Q  216 tttactatctttcattgattcattccactc-ggtgtttcttctttctgttctgattgaagtcatcagtgggctcctcttc 294  Q
    ||||| ||||||||| |||||||||||||| ||  ||||||||||||||||| ||||||||||||||||||||| |||||    
T  5334532 tttaccatctttcatagattcattccactcaggcttttcttctttctgttctcattgaagtcatcagtgggctcatcttc 5334453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 5398627 - 5398520
Alignment:
Q  4 gttaaaagacatttaaatggtatataacatggaagaattataacagaacaaattagagtctttcagaacgctttgtgaatacaaaaattcaccaaggata 103  Q
    |||||||||| ||||||| ||| || ||||||||||||| ||||||||||||||||| |||||||  ||    | |||||| |||||||||||| |||||    
T  5398627 gttaaaagacttttaaatagtacatgacatggaagaattgtaacagaacaaattagaatctttcaccac----tctgaata-aaaaattcaccatggata 5398533  T
Q  104 aaatctagaaact 116  Q
    |||||||||||||    
T  5398532 aaatctagaaact 5398520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 5449043 - 5448965
Alignment:
Q  225 tttcattgattcattccactcggtgtttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaa 303  Q
    |||||||||||||||| ||| | | |||||||||||||||||||||||||||||| | ||| || ||||||||||||||    
T  5449043 tttcattgattcattctacttgatttttcttctttctgttctgattgaagtcatctgcgggatcgtcttcagtagagaa 5448965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 5283100 - 5283153
Alignment:
Q  225 tttcattgattcattccactcggtgtttcttctttctgttctgattgaagtcat 278  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  5283100 tttcattgattcattccactcggtttttcttctttctgttctgagtgaagtcat 5283153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 5334640 - 5334567
Alignment:
Q  55 attagagtctttcagaacgctttgtgaatacaaaaattcaccaaggataaaatctagaaactacagaccaaaaat 129  Q
    |||||| |||||||  || |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||    
T  5334640 attagaatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaacttcag-ccaaaaat 5334567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 5687661 - 5687599
Alignment:
Q  52 caaattagagtctttcagaacgctttgtgaatacaaaaattcaccaaggataaaatctagaaact 116  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||||  ||||||||||||||||||    
T  5687661 caaattagaatctttcaaaactctttgtgaatacaaaaattcacc--ggataaaatctagaaact 5687599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 5098507 - 5098459
Alignment:
Q  321 catcgtatacgagataaactgctgtctttttcacaatgaaactgttctc 369  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  5098507 catcatataccagataaactgctgtctttttcacaatgaaactgttctc 5098459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 315
Target Start/End: Original strand, 5155843 - 5155931
Alignment:
Q  227 tcattgattcattccactcggtgtttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaatctcttgacaga 315  Q
    |||||||||||||||||  ||  ||||||||||||||| |||||| |||||||| |||| ||| |||||| ||  ||||||||||||||    
T  5155843 tcattgattcattccacctggcctttcttctttctgttttgattgcagtcatcaatgggatccccttcagaagctaatctcttgacaga 5155931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 5242506 - 5242559
Alignment:
Q  316 tggtccatcgtatacgagataaactgctgtctttttcacaatgaaactgttctc 369  Q
    |||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  5242506 tggttcatcatatacgagataaactactgtcttcttcacaatgaaactgttctc 5242559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 5156007 - 5156052
Alignment:
Q  316 tggtccatcgtatacgagataaactgctgtctttttcacaatgaaa 361  Q
    |||| |||||||||| |||||||||| |||||| ||||||||||||    
T  5156007 tggttcatcgtatacaagataaactgttgtcttcttcacaatgaaa 5156052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 369
Target Start/End: Complemental strand, 5178040 - 5177987
Alignment:
Q  316 tggtccatcgtatacgagataaactgctgtctttttcacaatgaaactgttctc 369  Q
    |||| |||| |||||||||||||||| ||| || ||||||||||||| ||||||    
T  5178040 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctc 5177987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 369
Target Start/End: Complemental strand, 5279865 - 5279812
Alignment:
Q  316 tggtccatcgtatacgagataaactgctgtctttttcacaatgaaactgttctc 369  Q
    |||| |||| |||||||||||||||| ||| || ||||||||||||| ||||||    
T  5279865 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctc 5279812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 5283223 - 5283268
Alignment:
Q  321 catcgtatacgagataaactgctgtctttttcacaatgaaactgtt 366  Q
    |||| ||||| ||||||| ||||||||| |||||||||||||||||    
T  5283223 catcatataccagataaattgctgtcttcttcacaatgaaactgtt 5283268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 5372398 - 5372353
Alignment:
Q  316 tggtccatcgtatacgagataaactgctgtctttttcacaatgaaa 361  Q
    |||| |||||||||||||||||| || |||||| ||||||||||||    
T  5372398 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaa 5372353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 369
Target Start/End: Complemental strand, 5427201 - 5427148
Alignment:
Q  316 tggtccatcgtatacgagataaactgctgtctttttcacaatgaaactgttctc 369  Q
    |||| |||| ||||||||||||||| |||||||  |||||| ||||||||||||    
T  5427201 tggttcatcatatacgagataaactactgtcttcgtcacaacgaaactgttctc 5427148  T

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Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 5688897 - 5688950
Alignment:
Q  316 tggtccatcgtatacgagataaactgctgtctttttcacaatgaaactgttctc 369  Q
    |||| |||| |||||||||||||||| ||| || ||||||||||||| ||||||    
T  5688897 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctc 5688950  T

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Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 5126623 - 5126675
Alignment:
Q  316 tggtccatcgtatacgagataaactgctgtctttttcacaatgaaactgttct 368  Q
    |||| |||| |||| ||||||||| |||||||| ||||||||||||| |||||    
T  5126623 tggttcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttct 5126675  T

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Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 5180773 - 5180821
Alignment:
Q  321 catcgtatacgagataaactgctgtctttttcacaatgaaactgttctc 369  Q
    |||| ||||| ||||||| ||||||||| |||||||||||||| |||||    
T  5180773 catcatataccagataaattgctgtcttcttcacaatgaaacttttctc 5180821  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 47985223 - 47985298
Alignment:
Q  227 tcattgattcattccactcggtgtttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagaga 302  Q
    |||||||||||||||||||| | ||||||||||||  ||||||||||||||||  ||| |||||||||||||||||    
T  47985223 tcattgattcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 47985298  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 47994510 - 47994585
Alignment:
Q  227 tcattgattcattccactcggtgtttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagaga 302  Q
    |||||||||||||||||||| | ||||||||||||  ||||||||||||||||  ||| |||||||||||||||||    
T  47994510 tcattgattcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 47994585  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 48003797 - 48003872
Alignment:
Q  227 tcattgattcattccactcggtgtttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagaga 302  Q
    |||||||||||||||||||| | ||||||||||||  ||||||||||||||||  ||| |||||||||||||||||    
T  48003797 tcattgattcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 48003872  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 48013082 - 48013157
Alignment:
Q  227 tcattgattcattccactcggtgtttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagaga 302  Q
    |||||||||||||||||||| | ||||||||||||  ||||||||||||||||  ||| |||||||||||||||||    
T  48013082 tcattgattcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 48013157  T

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Target: scaffold1476 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 228 - 163
Alignment:
Q  192 aattgatttttgctcggccattgctttactatctttcattgattcattccactcggtgtttcttct 257  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||||| |||||||| | ||||||||    
T  228 aattgatttttgctccgccattgttttaccatctttcattgattcactccactcgttttttcttct 163  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 22583209 - 22583280
Alignment:
Q  192 aattgatttttgctcg--gccattgctttactatctttcattgattcattccactcggtgtttcttctttct 261  Q
    |||||||||||||||   ||||||| ||||| |||||||||||||||| |||||||| | ||||||||||||    
T  22583209 aattgatttttgctctccgccattgttttaccatctttcattgattcactccactcgatttttcttctttct 22583280  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 4132612 - 4132663
Alignment:
Q  316 tggtccatcgtatacgagataaactgctgtctttttcacaatgaaactgttc 367  Q
    |||| |||| |||| ||||||||||||||||||  |||||||||||||||||    
T  4132612 tggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttc 4132663  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 4319296 - 4319347
Alignment:
Q  316 tggtccatcgtatacgagataaactgctgtctttttcacaatgaaactgttc 367  Q
    |||| |||| |||| ||||||||||||||||||  |||||||||||||||||    
T  4319296 tggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttc 4319347  T

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Target: scaffold0294 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 7741 - 7793
Alignment:
Q  261 tgttctgattgaagtcatcagtgggctcctcttcagtagagaatctcttgaca 313  Q
    |||||||||||||| | |||||||||||||||| |||| |||  |||||||||    
T  7741 tgttctgattgaagccttcagtgggctcctcttgagtacagatactcttgaca 7793  T

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